View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_23 (Length: 381)
Name: NF19915_low_23
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 4532989 - 4532639
Alignment:
| Q |
13 |
aatataagtccaagtccttttgtccaatttatcatttatgtaatatatattactgcatattgtaatcacaacaatcaacattagaaagnnnnnnnngagt |
112 |
Q |
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| T |
4532989 |
aatataagtccaagtccttttgtccaatttatcatttatgtaatatatattactgcatattgtaatcacaacaatcaacattagaaagaaaaaaaagagt |
4532890 |
T |
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| Q |
113 |
atataataattattcaaataaaaacctattttttattactcaaattgcatttaaaaaataagtaaagatcttaccttgcacatgctataagctgaatgac |
212 |
Q |
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| T |
4532889 |
atataataattattcaaataaaaacctattttttattactcaaattgcatttaaaaaataagtaaagatcttaccttgcacatgctataagctgaatgac |
4532790 |
T |
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| Q |
213 |
agatccaaagaggagaaaagtgcaattgaaggctaaccccaatgctttccaatatctacctagtaatccatcaagaacttcaaaccactgaaatccacaa |
312 |
Q |
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| T |
4532789 |
agatccaaagagaagaaaagtgcaattgaaggctaaccccaatgctttccaatatctacctagtaatccatcaagaacttcaaaccactgaaatccacaa |
4532690 |
T |
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| Q |
313 |
aaacaatattgtttcaatagttatattagaaacaaatatgcatgatggaag |
363 |
Q |
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| T |
4532689 |
aaacaatattgtttcaatagttatattagaaacaaatatgcatgatggaag |
4532639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 24627116 - 24626983
Alignment:
| Q |
176 |
aaagatcttaccttgcacatgctataagctgaatgacagatccaaagaggagaaaagtgcaattgaaggctaaccccaatgctttccaatatctacctag |
275 |
Q |
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| T |
24627116 |
aaagatcttacctagcacaggctataagctgaatcacagatccaaagaggaggaaagtacaattgaaagctagccccaatgctttccaatatggacccag |
24627017 |
T |
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| Q |
276 |
taatccatcaagaacttcaaaccactgaaatcca |
309 |
Q |
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| T |
24627016 |
taacccatcaagcacttcaaaccactgaaatcca |
24626983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 35321859 - 35321777
Alignment:
| Q |
184 |
taccttgcacatgctataagctgaatgacagatccaaagaggagaaaagtgcaattgaaggctaaccccaatgctttccaata |
266 |
Q |
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| T |
35321859 |
taccttgcacaagctatgagctggataacagatccaaagagaaggaaagtgcagttgaaagctaatccaattgctttccaata |
35321777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 35322019 - 35321965
Alignment:
| Q |
17 |
taagtccaagtccttttgtccaatttatcatttatgtaatatatattactgcata |
71 |
Q |
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|||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |
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| T |
35322019 |
taagtccaagtcctcttgtccaagtgatcatttatgtagtatatgttactgcata |
35321965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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