View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_low_24 (Length: 371)

Name: NF19915_low_24
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_low_24
NF19915_low_24
[»] chr6 (1 HSPs)
chr6 (20-361)||(4916278-4916619)
[»] chr8 (10 HSPs)
chr8 (215-361)||(2929844-2929990)
chr8 (215-361)||(3012789-3012935)
chr8 (45-211)||(2930101-2930267)
chr8 (217-350)||(37795335-37795468)
chr8 (217-350)||(2946493-2946626)
chr8 (217-361)||(2920442-2920586)
chr8 (39-183)||(37795609-37795753)
chr8 (67-200)||(2946750-2946883)
chr8 (48-205)||(3012515-3012672)
chr8 (39-185)||(2920725-2920871)
[»] chr3 (2 HSPs)
chr3 (215-361)||(1507122-1507268)
chr3 (42-204)||(1506839-1507001)
[»] chr2 (2 HSPs)
chr2 (217-350)||(28024342-28024475)
chr2 (45-185)||(28024602-28024742)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 4916278 - 4916619
Alignment:
Q  20 gaaacgtggtatgagaatgcatgagtacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtcta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4916278 gaaacgtggtatgagaatgcatgagtacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgtgtccgaatgtcta 4916377  T
Q  120 aaatttccttcaaaaccctccactattaagcctaaaagtgtgttttcttttctgggatgcatccgagttctaatgcaagatcacaaacttgcttctgaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4916378 aaatttccttcaaaaccctccactattaagcctaaaagtgtgttttcttttctgggatgcatccgagttctaatgcaagatcacaaacttgcttctgaat 4916477  T
Q  220 ccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagttgaga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  4916478 ccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggggtcattggtgaagttgaga 4916577  T
Q  320 aggggtgctccttgcttgccagtcaccttgattctctctctg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4916578 aggggtgctccttgcttgccagtcaccttgattctctctctg 4916619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 215 - 361
Target Start/End: Complemental strand, 2929990 - 2929844
Alignment:
Q  215 tgaatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagt 314  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||| || ||||||| |||||||||||||||||| || ||||| ||| ||||||||||    
T  2929990 tgaatccaactgatggaccttttatagatgagaatttttatggaccaaatattgcatttttccagaaagaactcaacgcgataggggtcattagtgaagt 2929891  T
Q  315 tgagaaggggtgctccttgcttgccagtcaccttgattctctctctg 361  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||    
T  2929890 tgaaaaggggtgctccttgcttgccagtcaccttgatactctctctg 2929844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 3012789 - 3012935
Alignment:
Q  215 tgaatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagt 314  Q
    |||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||  ||||||||||||||| ||||||||||| |||  |||||||||    
T  3012789 tgaatccaactgatgggccttttattgatgagaaattttatggacctaaaattgcaattttccagaaagaactgaatgcaataggggtcactagtgaagt 3012888  T
Q  315 tgagaaggggtgctccttgcttgccagtcaccttgattctctctctg 361  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  3012889 tgagaagggttgctccttgcttgccagtcaccttgactctctctctg 3012935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 2930267 - 2930101
Alignment:
Q  45 tacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccctccacta 144  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||| ||  ||| ||||| | | |||||||| || ||||||||||| |||||||| |    
T  2930267 tacaaggcagagctgaagagcattggtgttgttactgaattgaaagacgggttgaggtttgtggctgaatgtctgaattttccttcaaatccctccacca 2930168  T
Q  145 ttaagcctaaaagtgtgttttcttttctgggatgcatccgagttctaatgcaagatcacaaacttgc 211  Q
    |||  ||| ||||||||||||||||  ||| |||||||| | ||||||| |||||| |||| |||||    
T  2930167 ttagtcctgaaagtgtgttttctttattggaatgcatccaacttctaatacaagataacaaccttgc 2930101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 37795468 - 37795335
Alignment:
Q  217 aatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagttg 316  Q
    |||||||||||||| |||||||||||||  ||||  |||||||||||||| |||||||||||||||||| |||||||||| ||||||   | |||  | |    
T  37795468 aatccaactgatgggccttttattgatgcaaatttttatggacctaaaatagcatctttccagaaagaattcaatgcaatcggtgtcaccactgacctag 37795369  T
Q  317 agaaggggtgctccttgcttgccagtcaccttga 350  Q
    |||| || ||||||||||||||| ||||||||||    
T  37795368 agaaaggatgctccttgcttgccggtcaccttga 37795335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 2946626 - 2946493
Alignment:
Q  217 aatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagttg 316  Q
    ||||||||| |||| |||||||||||||||| ||  ||||||||| ||||||    || ||| |||||||||  ||| ||||| ||| ||||||||||||    
T  2946626 aatccaactaatgggccttttattgatgagagtttttatggacctgaaattgtcctttaccataaagaactcgctgccataggggtcattagtgaagttg 2946527  T
Q  317 agaaggggtgctccttgcttgccagtcaccttga 350  Q
    |||| |||||||| |||||||||| |||||||||    
T  2946526 agaaagggtgctctttgcttgccaatcaccttga 2946493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 361
Target Start/End: Complemental strand, 2920586 - 2920442
Alignment:
Q  217 aatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagttg 316  Q
    ||||||||||| ||||||||||||||||| ||||  ||||||  ||| || |||||||||||||||||||||  ||||||||| |||  || |||| | |    
T  2920586 aatccaactgacggaccttttattgatgaaaatttttatggaattaagatagcatctttccagaaagaactcggtgcaataggagtcactattgaactag 2920487  T
Q  317 agaaggggtgctccttgcttgccagtcaccttgattctctctctg 361  Q
    |||| ||||||||||||||| || | |||||| ||  ||||||||    
T  2920486 agaaagggtgctccttgctttccggacaccttcataatctctctg 2920442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 37795753 - 37795609
Alignment:
Q  39 catgagtacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccct 138  Q
    ||||| ||||||| ||| ||||||| | |||| ||||||||| |||||||| |||| |||| ||||| | |  ||||||| || ||||||||| | ||||    
T  37795753 catgaatacaaggaagaactgaagaaccttggtgttgttactgaattgaaacatggtgtgaggtttgtgcctaaatgtctgaattttccttcagatccct 37795654  T
Q  139 ccactattaagcctaaaagtgtgttttcttttctgggatgcatcc 183  Q
    |||| ||||  ||| |||||||||||||||| |||| ||||||||    
T  37795653 ccaccattactcctgaaagtgtgttttctttgctggaatgcatcc 37795609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 2946883 - 2946750
Alignment:
Q  67 ttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccctccactattaagcctaaaagtgtgttttc 166  Q
    |||| ||||||||| ||||||||||||||||||  ||||   | |||| ||| || |||||||| || || ||||||||||  ||| ||||||||| |||    
T  2946883 ttggtgttgttactgaattgaaagatggagtgacatttgtacctgaatctctgaattttccttccaatccatccactattactcctgaaagtgtgtgttc 2946784  T
Q  167 ttttctgggatgcatccgagttctaatgcaagat 200  Q
    |||  ||| |||||||||| ||||||||||||||    
T  2946783 tttgatggaatgcatccgacttctaatgcaagat 2946750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 3012515 - 3012672
Alignment:
Q  48 aaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccctccactatta 147  Q
    |||||||||||||||||| |||| ||||||||| |||||||||| ||  |||  |||| | | |||||||| |  ||||||||||| |||||||  ||||    
T  3012515 aaggcagagctgaagagcattggtgttgttactgaattgaaagacgggttgagttttgtggctgaatgtctgatgtttccttcaaatccctccatcatta 3012614  T
Q  148 agcctaaaagtgtgttttcttttctgggatgcatccgagttctaatgcaagatcacaa 205  Q
      ||| ||||||||||| |||| |||| | |||||| | ||||||||| |||| ||||    
T  3012615 gtcctgaaagtgtgtttgctttgctggaaagcatccaacttctaatgctagataacaa 3012672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 2920871 - 2920725
Alignment:
Q  39 catgagtacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccct 138  Q
    ||||| ||||| | ||| ||||||||| |||| ||||||||| |||||||| ||||||||| ||||| | |   |||| | || ||||||||| | ||||    
T  2920871 catgaatacaaagaagatctgaagagcattggtgttgttactgaattgaaaaatggagtgaggtttgtgcctacatgtttgaattttccttcagatccct 2920772  T
Q  139 ccactattaagcctaaaagtgtgttttcttttctgggatgcatccga 185  Q
    |||| ||||  ||| | |||||||||||||| |||  ||||||||||    
T  2920771 ccaccattagtcctgacagtgtgttttctttgctgaaatgcatccga 2920725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 1507122 - 1507268
Alignment:
Q  215 tgaatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagt 314  Q
    |||||||||| ||||| ||||||||  ||||| |||  || |||||||||||||||  || |||||||||||||||||||||||| |||  |||||||||    
T  1507122 tgaatccaaccgatgggccttttatcaatgagtatttctacggacctaaaattgcaatttaccagaaagaactcaatgcaataggggtcactagtgaagt 1507221  T
Q  315 tgagaaggggtgctccttgcttgccagtcaccttgattctctctctg 361  Q
    ||||||||||||||| |||||||||   |||||| | ||||||||||    
T  1507222 tgagaaggggtgctctttgcttgccgaccaccttaactctctctctg 1507268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 1506839 - 1507001
Alignment:
Q  42 gagtacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccctcca 141  Q
    |||||||||| ||||||| ||||| |||| ||||||||| ||||||||||||||| || ||||  | | |||||| | |  |||||||| || || ||||    
T  1506839 gagtacaaggaagagctggagagcattggtgttgttactgaattgaaagatggagcgaggtttttgcctgaatgtttgagttttccttccaatccttcca 1506938  T
Q  142 ctattaagcctaaaagtgtgttttcttttctgggatgcatccgagttctaatgcaagatcaca 204  Q
    | ||||  ||| |||||||||||||||| |||| ||| |||| | ||||||||||| ||||||    
T  1506939 ccattactcctgaaagtgtgttttctttgctggaatggatccaacttctaatgcaaaatcaca 1507001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 350
Target Start/End: Complemental strand, 28024475 - 28024342
Alignment:
Q  217 aatccaactgatggaccttttattgatgagaattggtatggacctaaaattgcatctttccagaaagaactcaatgcaataggtgtctttagtgaagttg 316  Q
    |||| ||||||||| |||||  ||||||  ||||  ||||| |||| ||| |||||||||||||||||| |||||||||||||||||   | |||  | |    
T  28024475 aatcaaactgatgggcctttcgttgatgcaaatttttatggtcctacaatagcatctttccagaaagaattcaatgcaataggtgtcaccactgacctag 28024376  T
Q  317 agaaggggtgctccttgcttgccagtcaccttga 350  Q
    |||| || ||||||||||| ||| ||||||||||    
T  28024375 agaaaggatgctccttgctcgccggtcaccttga 28024342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 28024742 - 28024602
Alignment:
Q  45 tacaaggcagagctgaagagctttggcgttgttactcaattgaaagatggagtgaagtttgcgtccgaatgtctaaaatttccttcaaaaccctccacta 144  Q
    |||||||  |||||||| |||  ||| ||||||||| |||  ||| |||||||||  |||| | | |||||||| || ||||||||| | ||| |||| |    
T  28024742 tacaaggacgagctgaaaagcactggtgttgttactgaatacaaacatggagtgagatttgtgcctgaatgtctgaattttccttcagatcccaccacca 28024643  T
Q  145 ttaagcctaaaagtgtgttttcttttctgggatgcatccga 185  Q
    |||  ||| |||||||||||||||| |||| ||||||||||    
T  28024642 ttactcctgaaagtgtgttttctttgctggaatgcatccga 28024602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University