View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_27 (Length: 357)
Name: NF19915_low_27
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 9400983 - 9400887
Alignment:
| Q |
243 |
ctttttagagccatgattttatgtaaaaagtaaattaactacatacattttcactaaaaatttgagatgaaagtagagtgtgtgtggaagccgcttt |
339 |
Q |
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| T |
9400983 |
ctttttagagccatgattttatgtaaaaagtaaattaactacatacattttcactaaaaatttgagatgaaagtagagtgtgtgtggaagccgcttt |
9400887 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 9401152 - 9401033
Alignment:
| Q |
63 |
cctataataaattcaaaagagaaactaatagtttactaaaccacacactannnnnnn----atgaaacttataatattaattgaatttattaattcatgt |
158 |
Q |
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| T |
9401152 |
cctataatcaattcaaaagagaaactaatagtttactaaagcacacaataattttttttttatgaaacttataatattaattgaatttattaattcatgt |
9401053 |
T |
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| Q |
159 |
gttcaaaccttataacgaat |
178 |
Q |
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| T |
9401052 |
gttcaaaccttataacgaat |
9401033 |
T |
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