View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_low_32 (Length: 333)
Name: NF19915_low_32
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 27803571 - 27803414
Alignment:
| Q |
11 |
tatcttcattgggtagtattgttagagaaatagaaaaattaaatcttggggaaagagaggtttcaaaagcataaatgtaatcctcgaaaagacaaaggtc |
110 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27803571 |
tatcttcattgggtaatattgttaaagaaatagaaaaattaaatcttagggaaagagaggtttcaaaagcataaatgtaatcctcgaaaagacaaaggtc |
27803472 |
T |
|
| Q |
111 |
atcatgtagttttagttttgaataagacaagttatatgaatataaaccttacaaaatt |
168 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27803471 |
atcatgtaattttaatttcgaataagacaagttatatgagtataaaccttacaaaatt |
27803414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 154 - 275
Target Start/End: Complemental strand, 27803399 - 27803278
Alignment:
| Q |
154 |
aaaccttacaaaattaagacaagggccaccttataaatgtcccagttttaaaccgctggagttaagatttttcaaatgctattcagaaaataaatgtgtt |
253 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27803399 |
aaaccttacaaaattaaaacaaggggcatcttataaatgtcccagttttaaactgccggagttaagatttttcaaatgccattcagaaaataaatgtgtt |
27803300 |
T |
|
| Q |
254 |
tgatataaataaagatgatcaa |
275 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27803299 |
tgatataaataaagatgatcaa |
27803278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 27800035 - 27799966
Alignment:
| Q |
131 |
aataagacaagttatatgaatataaaccttacaaaattaagacaagggccaccttataaatgtcccagtt |
200 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||||||| ||| ||| |||| |||||| ||||||||| |
|
|
| T |
27800035 |
aataagacaagttatatgagtgtaaacgttacaaaattataacaggggacaccctataaacgtcccagtt |
27799966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University