View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_low_34 (Length: 322)
Name: NF19915_low_34
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10596469 - 10596164
Alignment:
| Q |
1 |
ctgcttcacaggaatgcttctctggttattcgttttctcggtattatctgaaacacttctgtctgtgaatttaacatcatctgatttggcctttcctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10596469 |
ctgcttcacaggaatgcttctctggttattcgctttctcggtaatatccgaaacacttctgtctgtgaatttaacatcatctgatttggcctttcctcct |
10596370 |
T |
|
| Q |
101 |
tcctcttgattattgtagtaaggaaacagaaagaacggaaatggaaactcggatctcttttgatcactctgatgtttctgttccattcttccattttcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10596369 |
tcctcttgattattgtagtaaggaaacagaaagaacggaaatggaaactcggatctcttttgatcactctgatgtttctgttccattcttccattttcag |
10596270 |
T |
|
| Q |
201 |
cctcctcttttttgctatcagtttccttctcaaggcttcttattccatctccataacgaaacatgttcggatcacccttcacattaaagggcaaccatcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10596269 |
cctcctcttttttgctatcagtttccttctcaaggcttcttattccatctccatcacgaaacatgttcggatcacccttcacatcaaagggcaaccatcc |
10596170 |
T |
|
| Q |
301 |
actcca |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10596169 |
actcca |
10596164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University