View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_38 (Length: 311)
Name: NF19915_low_38
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_38 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 16699563 - 16699465
Alignment:
| Q |
205 |
cacatataccctccatttttt---ctctctaaattttacaaaataagagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttcat |
300 |
Q |
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| T |
16699563 |
cacatataccctccatttttttttctttctatattttacaaaataaaagaaaggtaagtgtaatttagtaaagattaatgtttacatatttgatttcat |
16699465 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 1366376 - 1366301
Alignment:
| Q |
127 |
tcggttgactgtcgtaaaaaccataaatgaatgaatctactggataccaaatctaagagatacgtaagctatattt |
202 |
Q |
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| T |
1366376 |
tcggttgaatgtcataaaaaccatgaatgaattaatccactggataccaaatctaagagatacgtaagctatattt |
1366301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 17622223 - 17622159
Alignment:
| Q |
127 |
tcggttgactgtcgtaaaaaccataaatgaatgaatctactggataccaaatctaagagatacgt |
191 |
Q |
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| T |
17622223 |
tcggttgactgtcataaaaaccatgaatgaatgaatccactggataccaaatctaagagatacgt |
17622159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 17629406 - 17629342
Alignment:
| Q |
127 |
tcggttgactgtcgtaaaaaccataaatgaatgaatctactggataccaaatctaagagatacgt |
191 |
Q |
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| T |
17629406 |
tcggttgactgtcataaaaaccatgaatgaatgaatccactggataccaaatctaagagatacgt |
17629342 |
T |
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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18321183 - 18321247
Alignment:
| Q |
1 |
ttgtagaagtctagttcttttattagatatattgtttgtttatatatttaatcatgtcattttaa |
65 |
Q |
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| T |
18321183 |
ttgtagaagtctagttcctttattaaatatatactttgtttatatatttaatcatgtcatcttaa |
18321247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19792502 - 19792455
Alignment:
| Q |
1 |
ttgtagaagtctagttcttttattagatatattgtttgtttatatatt |
48 |
Q |
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| T |
19792502 |
ttgtagaaatctagttcctttgttagatatattctttgtttatatatt |
19792455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 18757171 - 18757109
Alignment:
| Q |
141 |
taaaaaccataaatgaatgaatctactggataccaaatctaagagatacgtaagctatatttt |
203 |
Q |
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| T |
18757171 |
taaaaaccatgaatgaatgaatccactggataccaaatctaagagatacgtaagctatatttt |
18757109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 26413258 - 26413327
Alignment:
| Q |
131 |
ttgactgtcgtaaaaaccataaatgaatgaatctactggataccaaatctaagagatacgtaagctatat |
200 |
Q |
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| T |
26413258 |
ttgactatcataaaaatcatgagtgagtgaatccactggataccaaatctaagagatacctaacctatat |
26413327 |
T |
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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 12284926 - 12284987
Alignment:
| Q |
142 |
aaaaaccataaatgaatgaatctactggataccaaatctaagagatacgtaagctatatttt |
203 |
Q |
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| T |
12284926 |
aaaaaccatgaatgaatgaatccactggataccaaatctaaaagatacgtaagctatatttt |
12284987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 21485 - 21442
Alignment:
| Q |
136 |
tgtcgtaaaaaccataaatgaatgaatctactggataccaaatc |
179 |
Q |
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| T |
21485 |
tgtcataaaaaccatgaatgaatgaatccactggataccaaatc |
21442 |
T |
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