View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_low_39 (Length: 306)
Name: NF19915_low_39
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_39 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 7541358 - 7541662
Alignment:
| Q |
2 |
taaagcagttcccattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttct |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7541358 |
taaagcagttcccattttgtaaatgtagtcatccaatacattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttct |
7541457 |
T |
|
| Q |
102 |
tgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatcttatttgaactgccagaagcattattcttagcagaaactg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7541458 |
tgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatcttatttgaactgccagaagcattattcttagcagaaactg |
7541557 |
T |
|
| Q |
202 |
tcaaaataccattttcatcaatagcaaaacaaacatttgaagaaggggagccgcgaggagctgggggaatgccgaacaaattaaaacaaccaagcaaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7541558 |
tcaaaataccattttcatcaatagcaaaacaaacatttgaagaaggggagccgcaaggagctgggggaatgccgaacaaattaaaacaaccaagcaaatt |
7541657 |
T |
|
| Q |
302 |
gttat |
306 |
Q |
| |
|
||||| |
|
|
| T |
7541658 |
gttat |
7541662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 12246442 - 12246174
Alignment:
| Q |
2 |
taaagcagttcccattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttct |
101 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| | | |||||||| ||| |
|
|
| T |
12246442 |
taaagcatttcccattttgtaaatgtagtcatccaaagcattcactgctttggccttccttaggaatctctggtcttcaatatgaaaattctcagcctct |
12246343 |
T |
|
| Q |
102 |
tgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatcttatttgaactgccagaagcattattcttagcagaaactg |
201 |
Q |
| |
|
| |||||| || || || || ||||| ||||| |||||||||| ||| ||||| ||||||| ||||||| ||||||||| | ||||| |||||||||||| |
|
|
| T |
12246342 |
ttaattaatttgtttatttcttcacttgacaacctttctttgtaattagttattgtaatctcatttgaattgccagaagaactattcgtagcagaaactg |
12246243 |
T |
|
| Q |
202 |
tcaaaataccattttcatcaatagcaaaacaaacatttgaagaaggggagccgcgaggagctgggggaa |
270 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| |||||| ||||| || |||||||||||||||| |
|
|
| T |
12246242 |
tcaaaataccattttcaccaatagcaaaacatacatctgaagagggggaaccacgaggagctgggggaa |
12246174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 14702553 - 14702770
Alignment:
| Q |
14 |
cattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaacttt |
113 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| || | || |
|
|
| T |
14702553 |
cattttgtaaatgaagtaatccaattcattcaccactttggccttccttaggaatttcatgtcttcaatatggtaattctcagcttcttgaa-tagcctt |
14702651 |
T |
|
| Q |
114 |
ttaatatcctcactcgacaatctttctttgtgattggttatcgtaatcttatttgaactgccagaagcattattcttagcagaaactgtcaaaataccat |
213 |
Q |
| |
|
||||| ||| ||| ||||| ||||||||||||||||||||||||| | | ||||| |||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
14702652 |
ttaatttccaaacttgacaacctttctttgtgattggttatcgtaagcacgtccgaacttccagaagcattattcttagctgaaatagtcaaaataccat |
14702751 |
T |
|
| Q |
214 |
tttcatcaatagcaaaaca |
232 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14702752 |
tttcatcaatagcaaaaca |
14702770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 12259609 - 12259315
Alignment:
| Q |
2 |
taaagcagttcccattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttct |
101 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||| | ||||| ||| |||||||||||| |
|
|
| T |
12259609 |
taaagcatttctcattttgtaaatgtaatcatccaatgcattcactgctttagatttctttaggaatttcttgtcgtaaatacagtaattctcagcttct |
12259510 |
T |
|
| Q |
102 |
tgaattaactttttaatatcctcactcgacaatctttctttgtgattg-gttatcgtaatcttatttgaactgccagaagcattattcttagcagaaact |
200 |
Q |
| |
|
|| ||||| || |||| || ||||| ||||| | |||| | ||||| ||||||| |||||| |||||||| |||||||||| |||||||| |
|
|
| T |
12259509 |
tgtattaatttcttaa--------cttgacaacctttcat-gtgaaagagttattgtaatctcatttgatgtgccagaaatattattcttaacagaaact |
12259419 |
T |
|
| Q |
201 |
gtcaaaataccattttcatcaatagcaaaacaaacatttgaagaaggggagccgcgaggagctgggggaatgccgaacaaatt-aaaacaaccaagcaaa |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | |||| | | ||||| ||||||||||| ||||| || ||||| || |||| | ||||||||| |
|
|
| T |
12259418 |
gtcaaaataccattttcatcaatagaaaaacaaacttcagaagcatgcgagccacgaggagctggaggaattcc-aacaatttcaaaagagccaagcaaa |
12259320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 11998673 - 11998834
Alignment:
| Q |
2 |
taaagcagttcccattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaata-cggtatttctcagcttc |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
11998673 |
taaagcatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgggaaattctcagcttc |
11998772 |
T |
|
| Q |
101 |
ttgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatct |
162 |
Q |
| |
|
|| ||| |||||||||| || ||| |||| || ||||||| ||||||||| ||||||| |
|
|
| T |
11998773 |
tttaatctactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct |
11998834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 12234252 - 12234343
Alignment:
| Q |
3 |
aaagcagttcccattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctc |
94 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
12234252 |
aaagcatttctcattttgtaaatgtagagatccaatgcattcactgctttagccttccttaggaatttcttgtcttcaatatggtaattctc |
12234343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 16663013 - 16662868
Alignment:
| Q |
17 |
tttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaacttttta |
116 |
Q |
| |
|
|||||||||| ||||||| |||||||||| | | |||||||||||||||||||||| |||||| | |||| | || |||||||||||| || |||| | |
|
|
| T |
16663013 |
tttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttca |
16662914 |
T |
|
| Q |
117 |
atatcctcactcgacaatctttctttgtgattggttatcgtaatct |
162 |
Q |
| |
|
|| || | || || || |||||||||| |||||||||||| |||| |
|
|
| T |
16662913 |
atttcgactctggataacctttctttgtcattggttatcgtgatct |
16662868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 52549965 - 52549662
Alignment:
| Q |
2 |
taaagcagttcccattttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttct |
101 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
52549965 |
taaagcatttctgattttgtaaatgtagtcatccaatgcattccatggtttagccttccttaggaatttcttgtcttcaatacagtaattctcagcttct |
52549866 |
T |
|
| Q |
102 |
tgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatcttatttgaactgccagaagcattattcttagcagaaactg |
201 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
52549865 |
tgaattaattttttaatgtcctcacttgacaacctttctttgtgattggtaattgtaatcttatttgaactgccagaagcaatattcttagcggaaactg |
52549766 |
T |
|
| Q |
202 |
tcaaaataccattttcatcaatagcaaaacaaacatttgaagaaggggagccgcgaggagctgggggaatgccgaacaaattaaaacaaccaagcaaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||| |||| |||||||| |
|
|
| T |
52549765 |
tcaaaataccattttcatcaatagaaaaacaaacatttgaa-aaggggagccgcgaggagctgggggaataccagacaaaataaaagaaccgagcaaatt |
52549667 |
T |
|
| Q |
302 |
gttat |
306 |
Q |
| |
|
||||| |
|
|
| T |
52549666 |
gttat |
52549662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 34467770 - 34467657
Alignment:
| Q |
53 |
ggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggtt |
152 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||| | |||||||||| |||| | | || ||| || | ||||||| ||| |||||| ||||||| |
|
|
| T |
34467770 |
ggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttcttttgtcgacaaccttcctttgtcattggtt |
34467671 |
T |
|
| Q |
153 |
atcgtaatcttatt |
166 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
34467670 |
attgtaatcttatt |
34467657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 6788706 - 6788875
Alignment:
| Q |
61 |
ttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaat |
160 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||| ||| || |||||||| || ||||| |||| |||||||||| ||||||||| ||||| |
|
|
| T |
6788706 |
ttaggaatttcttatcttcaacgaggtaattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaat |
6788805 |
T |
|
| Q |
161 |
cttatttgaactgccagaagcattattc-ttagcagaaactgtcaaaataccattttcatcaatagcaaaa |
230 |
Q |
| |
|
|| ||| | |||| | | ||| ||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
6788806 |
ctcattcatattgcccg-tggatttttcagtagcagaaacggtcaaaataccattttcatcaatagaaaaa |
6788875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 8615866 - 8616005
Alignment:
| Q |
18 |
ttgtaaatgtagtcatccaatgcattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaa |
117 |
Q |
| |
|
||||||||| ||||||| ||| |||||| | | |||||||||||||||||||| | |||||| ||||| | ||| ||||||||||| | ||||||| |
|
|
| T |
8615866 |
ttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaa |
8615965 |
T |
|
| Q |
118 |
tatcctcactcgacaatctttctttgtgattggttatcgt |
157 |
Q |
| |
|
| || ||| ||| || |||||||||| |||||||||||| |
|
|
| T |
8615966 |
tttcatcagccgataacctttctttgtcattggttatcgt |
8616005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 8646064 - 8646114
Alignment:
| Q |
51 |
ttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttct |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
8646064 |
ttggccttccttaggaatttctcatcttcaatacggtaattttcagcttct |
8646114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 8658536 - 8658598
Alignment:
| Q |
40 |
cattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttctt |
102 |
Q |
| |
|
|||||| | ||||||||||||||| |||| ||| ||||| ||||||||| |||||||||||| |
|
|
| T |
8658536 |
cattcattactttggccttccttaaaaattccttatcttccatacggtatctctcagcttctt |
8658598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 27831718 - 27831673
Alignment:
| Q |
192 |
gcagaaactgtcaaaataccattttcatcaatagcaaaacaaacat |
237 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
27831718 |
gcagagactgtcaaaatgccattttcatcgatagcaaaacatacat |
27831673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 27849127 - 27849071
Alignment:
| Q |
62 |
taggaatttcttgtcttcaatacggtatttctcagcttcttgaattaactttttaat |
118 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
27849127 |
taggaatttctcatcttcatcacggtggttctcagcttcttgaatcaactttttaat |
27849071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 35131780 - 35131829
Alignment:
| Q |
188 |
cttagcagaaactgtcaaaataccattttcatcaatagcaaaacaaacat |
237 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
35131780 |
cttagcagaaacagtcaaaataccattttcatcgatagtaaaacaaacat |
35131829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University