View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_4 (Length: 595)
Name: NF19915_low_4
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 95 - 588
Target Start/End: Complemental strand, 35047662 - 35047169
Alignment:
| Q |
95 |
gacaaatgatgcaaactatgattcaagtcttcgtcttcttgtgtccaataaaagatcacaattcaaatatttgggcgcaaagaatgaatcaaatcgatca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047662 |
gacaaatgatgcaaactatgattcaagtcttcgtcttcttgtgtccaataaaagatcacaattcaaatatttgggcgcaaagaatgaatcaaatcgatca |
35047563 |
T |
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| Q |
195 |
acaaaaatatctaaattctcaaagccaaccttgtgaaaatcaactctatgctaataatacttatacttttttaatttatgattagggcatctccattgta |
294 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047562 |
acaaaaatatctaaattctcaaagacaaccttgtgaaaatcaactctatgctaataatacttatacttttttaatttatgattagggcatctccattgta |
35047463 |
T |
|
| Q |
295 |
ttccacaatgttctacaagttcaagaacatgatctagtttcattgtccattgaagttgggtgatgtgaaagtcaggtcggagaactgttcctcaaggaaa |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35047462 |
ttccacaatgttctacaagttcaagaacatgatctagtttcattgtccattgaagttggatgatgtgaaagtcaggtcggagaactgttcctcaaggaaa |
35047363 |
T |
|
| Q |
395 |
acatgttccagcagctatacgtcacaaaaaagtaggaagaaagggaaagaaaatccagatttgaaaatacgttaacgacaaagcttgagttttttgaaaa |
494 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047362 |
acatgttccagcagctatacgtcccaaaaaagtaggaagaaagggaaagaaaatccagatttgaaaatacgttaacgacaaagcttgagttttttgaaaa |
35047263 |
T |
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| Q |
495 |
tccagatttatcatctattagagtnnnnnnnnnnnnnnngaaaggatctattagagtaaaaatagatgataaatctcacatgatattcttggac |
588 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35047262 |
tccagatttatcatctattagaataaattttttttttttgaaaggatctattagagtaaaaatagatgataaatctcacatgatatttttggac |
35047169 |
T |
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