View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_43 (Length: 300)
Name: NF19915_low_43
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 42918053 - 42918271
Alignment:
| Q |
1 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattgatgcaagaggttcttagttattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42918053 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattggtgcaagaggttcttagttattt |
42918152 |
T |
|
| Q |
101 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
200 |
Q |
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| T |
42918153 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
42918252 |
T |
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| Q |
201 |
atggttatgaagaattatc |
219 |
Q |
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||||||||||||||||||| |
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| T |
42918253 |
atggttatgaagaattatc |
42918271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 23254943 - 23255161
Alignment:
| Q |
1 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattgatgcaagaggttcttagttattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23254943 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattggtgcaagaggttcttagttattt |
23255042 |
T |
|
| Q |
101 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
200 |
Q |
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| T |
23255043 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
23255142 |
T |
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| Q |
201 |
atggttatgaagaattatc |
219 |
Q |
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||||||||||||||||||| |
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| T |
23255143 |
atggttatgaagaattatc |
23255161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 53535863 - 53536081
Alignment:
| Q |
1 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattgatgcaagaggttcttagttattt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53535863 |
agattccacatatgaagaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattggtgcaagaggttcttagttattt |
53535962 |
T |
|
| Q |
101 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53535963 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
53536062 |
T |
|
| Q |
201 |
atggttatgaagaattatc |
219 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
53536063 |
atggttatgaagaattatc |
53536081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4755597 - 4755814
Alignment:
| Q |
1 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattgatgcaagaggttcttagttattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4755597 |
agattccacatatgaaaaaagaacaattagaaagaagaaaggaattgccaacacaaaggaaatgtgatattcaattggtgcaagaggttcttagttattt |
4755696 |
T |
|
| Q |
101 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattcactgttagaatatgctactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4755697 |
agatcaataggtggaaaagaatagtgagatgttgaagttactttcatttttgtgttttgagtattgcttggatttattca-tgttagaatatgctactga |
4755795 |
T |
|
| Q |
201 |
atggttatgaagaattatc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
4755796 |
atggttatgaagaattatc |
4755814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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