View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_low_44 (Length: 296)
Name: NF19915_low_44
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_44 |
 | |
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| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 28568348 - 28568059
Alignment:
| Q |
1 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttg |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||| || |||||| |
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|
| T |
28568348 |
tccgatggagagtttttatttgatggatattatccaaaggtttggtattgagcactattttgctgaggaaataaaagtggctcttgaaaatctgcatttg |
28568249 |
T |
|
| Q |
101 |
atattgaacaccaatcctat---tgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtca |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| || || | |
|
|
| T |
28568248 |
atattgaacaccaatcctataattgattttgtgagtagccatgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaa |
28568149 |
T |
|
| Q |
198 |
atgcaggtttgtttaatacagatcctctccacatttgaatatatatatttagtaatataatgactaactataattgttgtgcagaattat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
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|
| T |
28568148 |
atgcaggtttgtttaatacagatcctctccaaaattgaatatatatatttagtaataaaatgactaactataattgttgtgtagatttat |
28568059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 28575186 - 28574951
Alignment:
| Q |
3 |
cgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgat |
102 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28575186 |
cgatggagagtttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgat |
28575087 |
T |
|
| Q |
103 |
attgaacaccaatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatgca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28575086 |
attgaacaccaatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctgagacaaggaggccactatgtcaatgca |
28574987 |
T |
|
| Q |
203 |
ggtttgtttaatacagatcctctccacatttgaata |
238 |
Q |
| |
|
|||| ||||||| | | |||||| ||||||||||| |
|
|
| T |
28574986 |
ggttagtttaattcgtaccctctctacatttgaata |
28574951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28580241 - 28580000
Alignment:
| Q |
1 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28580241 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttaccgaggagatcaaagtggctcttgaaaaactacatttg |
28580142 |
T |
|
| Q |
101 |
atattgaacaccaatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| || || |||| |
|
|
| T |
28580141 |
atattgaacaacaatcctattgattttgtaagtagccatgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatg |
28580042 |
T |
|
| Q |
201 |
caggtttgtttaatacagatcctctccacatttgaatatata |
242 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
28580041 |
caggttagtttaatacgtaccctctccacatttgaatatata |
28580000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28586398 - 28586185
Alignment:
| Q |
1 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586398 |
tccgatggaaagtttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttg |
28586299 |
T |
|
| Q |
101 |
atattgaacaccaatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatg |
200 |
Q |
| |
|
| ||||||||||||| | |||||||||| || |||||||||| |||||||| || ||||||||||||||||||| |||||||||||||| || || |||| |
|
|
| T |
28586298 |
acattgaacaccaattcaattgattttgcgagtagccatgaaatctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatg |
28586199 |
T |
|
| Q |
201 |
caggtttgtttaat |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28586198 |
caggtttgtttaat |
28586185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 26316246 - 26316004
Alignment:
| Q |
1 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttg |
100 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||| || ||||||||||||||||| ||| |||||||||||||||||||| |||||| ||| | |
|
|
| T |
26316246 |
tccgatggagagtttttatttgatcgatatcatccaaaggcttaacattgaacactactttgttgaagagatcaaagtggctcttgagaagctatattcg |
26316147 |
T |
|
| Q |
101 |
atattgaacaccaatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || |||||||||||| ||| || ||||||||||||||||||| ||||||||||| || ||||| |||| |
|
|
| T |
26316146 |
atattgaacaccaatcctaatgattttatgagtatccatgaactctacgaagttgcacttgcattccgcttgctcagacaaggaggacattatgtaaatg |
26316047 |
T |
|
| Q |
201 |
caggtttgtttaatacagatcctctccacatttgaatatatat |
243 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
26316046 |
caggttagtttaatacttacactctccacatttgaatatatat |
26316004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 20618580 - 20618387
Alignment:
| Q |
13 |
tttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacacc |
112 |
Q |
| |
|
|||| |||||||||| || ||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||| || | | ||||||||||| || | |
|
|
| T |
20618580 |
ttttcatttgattgacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtggctcttgagaaacaatttttgatattgagcagc |
20618481 |
T |
|
| Q |
113 |
aatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatgcaggtt |
206 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||| || ||||||||||||| ||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
20618480 |
aatccaattgattttgttagtagccatgaactctatgaagttgcacttgcattccgtttgctcagacaaggaggctattatgtcaatgcaggtt |
20618387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 28574931 - 28574887
Alignment:
| Q |
243 |
tatttagtaatataatgactaactataattgttgtgcagaattat |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
28574931 |
tatttagtaatatagtgactaactataattgttgtgtagatttat |
28574887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 28579980 - 28579939
Alignment:
| Q |
246 |
ttagtaatataatgactaactataattgttgtgcagaattat |
287 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
28579980 |
ttagtaatatagtgactaactataattgttgtgtagatttat |
28579939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 4745 - 4971
Alignment:
| Q |
5 |
atggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatat |
104 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || || |||||||||||||| || |||||||||| |
|
|
| T |
4745 |
atggagagtttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatat |
4844 |
T |
|
| Q |
105 |
tgaacaccaatcctat---tgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatgc |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| || || ||||| |
|
|
| T |
4845 |
tgaacaccaatcctataattgattttgtgagtagccatgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgc |
4944 |
T |
|
| Q |
202 |
aggtttgtttaatacagatcctctcca |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4945 |
aggtttgtttaatacagatcctctcca |
4971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 24071869 - 24071657
Alignment:
| Q |
1 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttg |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| ||| |||||||||| |||||||||||| | |||||| |
|
|
| T |
24071869 |
tccgatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaagcggctcttgaaaacttgcatttg |
24071770 |
T |
|
| Q |
101 |
atattgaacaccaatcctattgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgtcaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
24071769 |
atattgaacaccaatcctattgattttgtgagtagccatgaactctatcaagttgcacttgcattccgcttgctcagacaaggaggccattatgtaaatg |
24071670 |
T |
|
| Q |
201 |
caggtttgtttaa |
213 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
24071669 |
caggtatgtttaa |
24071657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 4541 - 4728
Alignment:
| Q |
5 |
atggaaagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatat |
104 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || || |||||||||||||| || |||||||||| |
|
|
| T |
4541 |
atggagagtttttatttgatcgatattatccaaaggtttggtattgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatat |
4640 |
T |
|
| Q |
105 |
tgaacaccaatcct---attgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggcca |
189 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4641 |
tgaacaccaatcctataattgattttgtgagtagccatgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggcca |
4728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3268 - 3328
Alignment:
| Q |
1 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3268 |
tccgatggaaagtttttatttgattgatattatccaaaggtttggcattgaacactacttt |
3328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 2600707 - 2600881
Alignment:
| Q |
21 |
tgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaatcctat |
120 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||| || ||| |||| | |||| || || | || ||| | || |
|
|
| T |
2600707 |
tgattgacattatccaaaggcttggcattgaacatcactttgctgaggagattgaagcagcccttcaaaatcaacataaaatgttcagcagaaatgccat |
2600806 |
T |
|
| Q |
121 |
tgattttgtgaatagccatgaactctatgaattttcacttgcattccgcttgctaagacaaggaggccactatgt |
195 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || | ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
2600807 |
tgattttgtccatagccatgaactccatgaagttgcgcttacatttcgcttgctaagacaaggaggccactatgt |
2600881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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