View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_45 (Length: 295)
Name: NF19915_low_45
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 25609483 - 25609219
Alignment:
| Q |
19 |
ttatgaaaattttcaacatcaaatactggaggtgtaaaagatataatactgatatcgctttgaatgctgtatggttggctctctcaatccaatctagctc |
118 |
Q |
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| T |
25609483 |
ttatgaaaactttcaacatcaaatactggaggtgtaaaagatataatactgatatcgctttgaatgctgtatggttggctctctcaatccaatctagctc |
25609384 |
T |
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| Q |
119 |
gtaatacctctcgttggttgaaaacagaaaaaatttatttaaaattatattgatctgaagctttgttaaatacaaacattgataggtaaatctcctaaaa |
218 |
Q |
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| T |
25609383 |
gtaatacctcttgttggttgaaaacagaaaaaatttatttaaaatgatattgatctgaagctttgttaaatacaaaaattgataggtaaatctcctaaaa |
25609284 |
T |
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| Q |
219 |
cattatatcttaatctactaaaacataattgataacatttaaatctcaaactaacagaatatttt |
283 |
Q |
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| T |
25609283 |
cattatatcttaatctactaaaacataattgataacatttaaatctcaaactaacagaatatttt |
25609219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 25605996 - 25605839
Alignment:
| Q |
76 |
ctttgaatgctgtatggttggctctctcaatccaatctagctcgtaat-acctctcgttggttgaaaacagaaaaaatttatttaaaattatattg-atc |
173 |
Q |
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| T |
25605996 |
ctttgtatgttgtatggttg-ctctctcaatggaacctagctcgtgattacctcttgttgtttcaaaacagaacaaa---aattaaaattatattggatc |
25605901 |
T |
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| Q |
174 |
tgaagctttgttaaatacaaacattgataggtaaatctcctaaaacattatatcttaatcta |
235 |
Q |
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| T |
25605900 |
taaagcttcattaaatacaaaaattgataactaaatatcctaaaacattatatcttaatcta |
25605839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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