View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_47 (Length: 286)
Name: NF19915_low_47
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 25645339 - 25645246
Alignment:
| Q |
176 |
tcagtgaaactttcaactgatccacaaagtgttgcagctagagaaagaagacatagaatcagtgataggttcaagattcttcagagtatgatcc |
269 |
Q |
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| T |
25645339 |
tcagtgaaactttcaactgatccacaaagtgttgcagctagagaaagaagacatagaatcagtgataggttcaagattcttcagagtatgatcc |
25645246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 25645499 - 25645383
Alignment:
| Q |
16 |
aatatctacattcccctactaaaaataattcaaaccatagtatnnnnnnnctttcattaattttcttagctagcacatggagtgtaacactatctcttat |
115 |
Q |
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| T |
25645499 |
aataactacattcccctactaaaaataattcaaaccatagtataaaaaaactttcattaattttcttagctagcacatggagtgtaacactatctcttat |
25645400 |
T |
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| Q |
116 |
acttatgggtcatgttc |
132 |
Q |
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| T |
25645399 |
tcttatgggtcatgttc |
25645383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 39073486 - 39073532
Alignment:
| Q |
194 |
gatccacaaagtgttgcagctagagaaagaagacatagaatcagtga |
240 |
Q |
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| T |
39073486 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtga |
39073532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 28934850 - 28934887
Alignment:
| Q |
219 |
aaagaagacatagaatcagtgataggttcaagattctt |
256 |
Q |
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| T |
28934850 |
aaagaaggcataaaatcagtgataggttcaagattctt |
28934887 |
T |
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