View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_low_49 (Length: 276)
Name: NF19915_low_49
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 36979786 - 36979530
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttcacaggccttatcatcggaggctatgtttaaaattctcatatgggacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
36979786 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaaaaacaattttcataggccttgtcatgggaggctatgtttaaaattcccatatgggacc |
36979687 |
T |
|
| Q |
101 |
aatgtagttgcaaatgatatgaacttgcccaaatgctttgctcctttgtcatgtgcaactgcctatatgtctttgtttgaactgctaaaagtaacatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36979686 |
aatgtagttgcaaatgatatgaacttgcccaaatgctttgctcctttgtcatgtgcaactgcctatatgtctttgtttgaactgctaaaagtaacatttt |
36979587 |
T |
|
| Q |
201 |
ctatcaaagcttttccttttcctttttacatatttgataatcattctctttccttgt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36979586 |
ctatcaaagcttttccttttcctttttacatatttgataatcattctctttccttgt |
36979530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2729838 - 2729785
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca |
54 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
2729838 |
acgtctttttctgttgtgtttcagccttgttagaagtgtgaatatcaattttca |
2729785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28443770 - 28443819
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaatt |
50 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||| ||||| ||||||| |
|
|
| T |
28443770 |
acgtctttttctagtgtgtttcagccttgtttgaagtgtgaacaacaatt |
28443819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29699559 - 29699507
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc |
53 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
29699559 |
acgtctttttctggtgtgtttcagccttgttagaaatatgaataccaattttc |
29699507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5357601 - 5357560
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaa |
42 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
5357601 |
acgtctttttctagtgtgtttcagccttgttagaagtgtgaa |
5357560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25271849 - 25271902
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca |
54 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |||| || || ||||||||||| |
|
|
| T |
25271849 |
acgtctttttctgatgtgtttcagccttgtttgaagtgtaaacaacaattttca |
25271902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5920819 - 5920766
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttca |
54 |
Q |
| |
|
|||| |||||||| ||||||| ||| |||||||||| ||||| ||||||||||| |
|
|
| T |
5920819 |
acgtatttttctgctgtgttttagccttgttagaagtgtgaacaacaattttca |
5920766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33900151 - 33900099
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc |
53 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||| || || |||||||||| |
|
|
| T |
33900151 |
acgtctttttctggtgtgtttcggcattgtttgaagtgtaaacaacaattttc |
33900099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12868533 - 12868585
Alignment:
| Q |
1 |
acgtctttttctggtgtgtttcagctttgttagaagcgtgaataacaattttc |
53 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
12868533 |
acgtgttttactggtgtgttttagctttgttagaagtatgaacaacaattttc |
12868585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University