View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_5 (Length: 588)
Name: NF19915_low_5
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 7414998 - 7414436
Alignment:
| Q |
18 |
atgtagacatgataatgaagaagtatatgatgttggattgttggaatttacatttagtaatgagtgtagtagtatatccctttgttaattctctctacta |
117 |
Q |
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| T |
7414998 |
atgtaggcatgataatgaagaaatatatgatgttggattgttggaatttacatttagtaatgagtgtagtagtatatccctttgttaattctctctacta |
7414899 |
T |
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| Q |
118 |
gttattgtagagttttgaaataccaaattaaattatgttagtatgttcttacttgctttttacgtttattaatctgtgtttgtttacacggtgagatacc |
217 |
Q |
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| T |
7414898 |
gttattgtagagttttgtaataccaaattaaattatgttagtatgttcttacttgctttttatgtttcttactctgtgt--gtttacacggtgggatacc |
7414801 |
T |
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| Q |
218 |
caccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcgagattttgaattgtaacgtccaacca |
317 |
Q |
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| T |
7414800 |
caccagtctgcattttaatcaattctataaatttaagcttctatcattttacgttttctttgt------acgtgagattttgaattgtaacgtccaacca |
7414707 |
T |
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| Q |
318 |
aaaacactattagacaattattgcaagttaaactggaatgaattttcttttacataattgttaaaaggtttctaaagtctaaaccatatacatatttctg |
417 |
Q |
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| T |
7414706 |
aatatactattagacaattattgcaagttaaactggatcgaattttcttttacataattgttaaaaggtttctaaagtctaaaccaaatacatatttctg |
7414607 |
T |
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| Q |
418 |
agaactcaaaactaacctagtgaatgtgctctcactcctagaatcctatataagaagatagatttgatttactagagtaaacgtagaaaatgaggtagta |
517 |
Q |
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| T |
7414606 |
agaactcaaaactaacctagtgaatgtggtctcactcctagaatcctatataagaagatggatttgatttactagagtaaacgtagaagatgaggtagta |
7414507 |
T |
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| Q |
518 |
atcataaatgcatattttgattttcaaattctaacctttcaatgatcataatcaacaaaatgaacaagcat |
588 |
Q |
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| T |
7414506 |
atcataaatgcatattttgattctcaaattctaacctttcaatgatcataatcaacaaaatgaacaagcat |
7414436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 581
Target Start/End: Complemental strand, 2317924 - 2317832
Alignment:
| Q |
490 |
tagagtaaacgtagaaaatgaggtagtaatcataaatgcatattttgattttcaaattctaacc-tttcaatgatcataatcaacaaaatgaa |
581 |
Q |
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| T |
2317924 |
tagagtaaacgtagacgaccaggtagtaatcataaatgcagattttgatactcaaattctaaccttttcaattatcataatcagcaaaatgaa |
2317832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 42477061 - 42476931
Alignment:
| Q |
195 |
gtttgtttacacggtgagatacccaccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcgaga |
294 |
Q |
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| T |
42477061 |
gtttgtttgcacagtgggatacccaccaacctgcgttttagccaactctacaaatccaaacttcgttattttcacgttttctcaatcttaggacacgaga |
42476962 |
T |
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| Q |
295 |
ttttgaattgtaacgtccaaccaaaaacact |
325 |
Q |
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| T |
42476961 |
ttttgaattgcatcgtcctaccaaacacact |
42476931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 41188989 - 41189101
Alignment:
| Q |
196 |
tttgtttacacggtgagatacccaccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcgagat |
295 |
Q |
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| T |
41188989 |
tttgtttacacggtgggatacccagcaaccttgcgtttggccaattctacaaatttgagcttcgttattttcacgttttatgagccttgggacacgagat |
41189088 |
T |
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| Q |
296 |
tttgaattgtaac |
308 |
Q |
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| T |
41189089 |
tttgtatagtaac |
41189101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 33680403 - 33680268
Alignment:
| Q |
192 |
tgtgtttgtttacacggtgagatacccaccaacctgcattttagtcaattttacaaatttaagcttctatatttttacgttttctctgccttggaatgcg |
291 |
Q |
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| T |
33680403 |
tgtgtttgtttacacggtgggatacccacaaacctgcgttttgaccaactctacaaatcttagcttccttatttttacgttttctttgccttgggacgcg |
33680304 |
T |
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| Q |
292 |
agattttgaattgtaacgtccaaccaaaaacactat |
327 |
Q |
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| T |
33680303 |
taattttgagttggaacgtgttaccaaacacactat |
33680268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 33396551 - 33396615
Alignment:
| Q |
261 |
tatttttacgttttctctgccttggaatgcgagattttgaattgtaacgtccaaccaaaaacact |
325 |
Q |
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| T |
33396551 |
tattttcatgttttctcagccttgggaggcaagattttgaattataacgtccaaccaaacacact |
33396615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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