View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_low_51 (Length: 275)

Name: NF19915_low_51
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_low_51
NF19915_low_51
[»] chr8 (5 HSPs)
chr8 (15-267)||(1782506-1782758)
chr8 (15-264)||(1776080-1776329)
chr8 (105-244)||(1800376-1800515)
chr8 (103-228)||(1767281-1767406)
chr8 (149-228)||(1771600-1771679)
[»] chr3 (1 HSPs)
chr3 (103-213)||(25729996-25730106)
[»] chr5 (3 HSPs)
chr5 (107-266)||(1672778-1672937)
chr5 (138-266)||(21124694-21124822)
chr5 (88-195)||(4081434-4081539)
[»] chr1 (4 HSPs)
chr1 (89-221)||(19790000-19790131)
chr1 (155-195)||(41324592-41324632)
chr1 (155-195)||(47249690-47249730)
chr1 (89-135)||(47249727-47249773)
[»] chr2 (2 HSPs)
chr2 (185-265)||(32315559-32315639)
chr2 (134-195)||(4845155-4845216)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 1782506 - 1782758
Alignment:
Q  15 aaaaacaatacacaacatctataaatcacaaactaataaagatgaaggtcttaaaactgttgatnnnnnnnnnccaatgaaagcttatttagtatttgtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  1782506 aaaaacaatacacaacatctataaatcacaaactaataaagatgaaggtcttaaaactgttgataaaaaaaaaccaatgaaagcttatttagtatttgtg 1782605  T
Q  115 agcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782606 agcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagtt 1782705  T
Q  215 ctctcaattatccataattgcatatcctctttgatgatattgtctcctttgct 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782706 ctctcaattatccataattgcatatcctctttgatgatattgtctcctttgct 1782758  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 1776080 - 1776329
Alignment:
Q  15 aaaaacaatacacaacatctataaa-tcacaaactaataaagatgaaggtcttaaaactgttgatnnnnnnnnnccaatgaaagcttatttagtatttgt 113  Q
    ||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||| |||| ||         ||||| ||||| ||| || |||||||    
T  1776080 aaaaataatacacaacatctataaaatcacaaactaataaacatcaaggtcttaaaattgtttatccaaaaaa-ccaataaaagcatatctaatatttgt 1776178  T
Q  114 gagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagt 213  Q
    ||||| || ||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1776179 gagcactccttagaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagt 1776278  T
Q  214 tctctcaattatccataattgcatatcctctttgatgatattgtctccttt 264  Q
    ||||||||||||||||||||||| ||||||| | |||| | ||||||||||    
T  1776279 tctctcaattatccataattgcagatcctctctaatgaaaatgtctccttt 1776329  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 1800376 - 1800515
Alignment:
Q  105 agtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacata 204  Q
    |||||||| ||||||  |||||||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  1800376 agtatttgcgagcaacttttagaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaacata 1800475  T
Q  205 tggaccagttctctcaattatccataattgcatatcctct 244  Q
    ||||| |||  ||||||| ||||||| ||| | |||||||    
T  1800476 tggacgagtattctcaatcatccatatttgaaaatcctct 1800515  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 1767281 - 1767406
Alignment:
Q  103 ttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaaca 202  Q
    |||||| |||| || ||| |||||||  | |||| | |||||| |||| || |||| ||||||||| ||||||||| |||  |||| |||||||| | ||    
T  1767281 ttagtaattgtaagaaatgtttagaagttcagagctaagttttgtaggattggagagcatgaccatatgatctgaaccctcaatcattttcactttagca 1767380  T
Q  203 tatggaccagttctctcaattatcca 228  Q
    |||||||| ||| |||||||||||||    
T  1767381 tatggacctgttgtctcaattatcca 1767406  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 1771600 - 1771679
Alignment:
Q  149 ggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaattatcca 228  Q
    |||||||| ||||||||||||||||| ||||||| |||||||| ||| |   || |||||||| |||||| ||| |||||    
T  1771600 ggtttagacaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatcca 1771679  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 25730106 - 25729996
Alignment:
Q  103 ttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaaca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||    
T  25730106 ttagtatttgtgagcaatctttagaatgtgagaggtgagtttttttggtttggagaacatgaccatatgatctgaaccatttatcactttcacctcaaca 25730007  T
Q  203 tatggaccagt 213  Q
    |||||||||||    
T  25730006 tatggaccagt 25729996  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 1672778 - 1672937
Alignment:
Q  107 tatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatg 206  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||| ||||||| ||||  |||| | |||    
T  1672778 tatttgtgagcaatctttagtatgtgagaggtgagcttttttggtttggagaacatgaccatttgatccgaatccattatcacattcagctcaatacatg 1672877  T
Q  207 gaccagttctctcaattatccataattgcatatcctctttgatgatattgtctcctttgc 266  Q
    || ||||||||| ||||||||||||||||||||| ||| | |||| | ||||||||||||    
T  1672878 gatcagttctcttaattatccataattgcatatcttctctaatgaaaatgtctcctttgc 1672937  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 21124822 - 21124694
Alignment:
Q  138 tgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaattatccataattgcat 237  Q
    |||| ||||| ||||| |||||||||||||| | |||||||||||||||||| ||||| |||| | |||||||| |||| | ||||||||||||||||||    
T  21124822 tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggaccaattctgttaattatccataattgcat 21124723  T
Q  238 atcctctttgatgatattgtctcctttgc 266  Q
    ||| ||| | |||| | ||||||||||||    
T  21124722 atcttctctaatgaaaatgtctcctttgc 21124694  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 4081539 - 4081434
Alignment:
Q  88 ccaatgaaagcttatttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatc 187  Q
    ||||||||||| ||| || ||||||||| |||||||||| |||||||  ||||| |||||  |||||||||||||| ||||||||||||||||| |||||    
T  4081539 ccaatgaaagcgtatctaatatttgtgaccaatctttagtatgtgag--gtgagcttttttagtttagagaacatggccatgtgatctgaatccattatc 4081442  T
Q  188 actttcac 195  Q
    || |||||    
T  4081441 acattcac 4081434  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 19790131 - 19790000
Alignment:
Q  89 caatgaaagcttatttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatca 188  Q
    |||||||||| ||| || |||||||||| ||||||||| ||||||||| | |||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  19790131 caatgaaagcatatctaatatttgtgagaaatctttagtatgtgagagttaagtttttt-ggtttggagaacatgaccatttgatctgaatcctttatca 19790033  T
Q  189 ctttcacttcaacatatggaccagttctctcaa 221  Q
    | ||||| |||||||||||||||||||||||||    
T  19790032 cattcacctcaacatatggaccagttctctcaa 19790000  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 41324592 - 41324632
Alignment:
Q  155 gagaacatgaccatgtgatctgaatcctttatcactttcac 195  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  41324592 gagaacatgaccatgtgatctgaatcctttatcacattcac 41324632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 47249730 - 47249690
Alignment:
Q  155 gagaacatgaccatgtgatctgaatcctttatcactttcac 195  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  47249730 gagaacatgaccatgtgatctgaatcctttatcacattcac 47249690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 47249773 - 47249727
Alignment:
Q  89 caatgaaagcttatttagtatttgtgagcaatctttagaatgtgaga 135  Q
    |||||||||| ||| || |||||||||||||||||||| ||||||||    
T  47249773 caatgaaagcatatataatatttgtgagcaatctttagtatgtgaga 47249727  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 32315559 - 32315639
Alignment:
Q  185 atcactttcacttcaacatatggaccagttctctcaattatccataattgcatatcctctttgatgatattgtctcctttg 265  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||    
T  32315559 atcacattcacctcaacatatggaccagttctctcaattatccataattgcatatcctctctaatgaaaatgtctcctttg 32315639  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 4845155 - 4845216
Alignment:
Q  134 gaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcac 195  Q
    |||||||| ||||| | ||||| ||||||||| ||||||||||||||| ||||||| |||||    
T  4845155 gaggtgagcttttttgctttagtgaacatgactatgtgatctgaatccattatcacattcac 4845216  T

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