View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_low_53 (Length: 273)

Name: NF19915_low_53
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_low_53
NF19915_low_53
[»] chr1 (10 HSPs)
chr1 (18-257)||(2569000-2569234)
chr1 (45-217)||(29119324-29119495)
chr1 (47-217)||(32676136-32676305)
chr1 (68-217)||(8462129-8462276)
chr1 (120-217)||(8809715-8809811)
chr1 (123-217)||(25161309-25161402)
chr1 (45-136)||(46435465-46435556)
chr1 (156-217)||(46435563-46435624)
chr1 (183-216)||(16679835-16679868)
chr1 (124-207)||(3688917-3689000)
[»] chr7 (7 HSPs)
chr7 (60-217)||(35341536-35341692)
chr7 (45-217)||(48250154-48250327)
chr7 (45-193)||(32694570-32694717)
chr7 (45-218)||(31306868-31307046)
chr7 (45-112)||(48072491-48072558)
chr7 (61-112)||(40856949-40857000)
chr7 (153-217)||(40856392-40856456)
[»] chr5 (14 HSPs)
chr5 (45-212)||(33858538-33858704)
chr5 (45-217)||(11607534-11607705)
chr5 (45-217)||(19357262-19357432)
chr5 (45-201)||(33271630-33271785)
chr5 (49-217)||(1826259-1826426)
chr5 (120-217)||(38010689-38010785)
chr5 (81-217)||(39570079-39570214)
chr5 (120-217)||(13015381-13015477)
chr5 (120-217)||(29989962-29990058)
chr5 (146-217)||(13086753-13086824)
chr5 (120-217)||(9827788-9827884)
chr5 (120-217)||(13478120-13478216)
chr5 (68-162)||(42148201-42148294)
chr5 (68-112)||(25482742-25482786)
[»] chr2 (10 HSPs)
chr2 (45-217)||(34392081-34392252)
chr2 (45-203)||(23863803-23863958)
chr2 (61-214)||(7381695-7381846)
chr2 (45-217)||(37357917-37358092)
chr2 (49-167)||(4779635-4779752)
chr2 (120-217)||(21603959-21604055)
chr2 (52-217)||(4775634-4775799)
chr2 (45-106)||(21606149-21606210)
chr2 (45-166)||(25275622-25275741)
chr2 (169-216)||(34904304-34904351)
[»] chr3 (17 HSPs)
chr3 (45-204)||(37742738-37742896)
chr3 (49-217)||(44380254-44380421)
chr3 (42-213)||(33509684-33509854)
chr3 (70-217)||(47426350-47426496)
chr3 (120-216)||(50934501-50934596)
chr3 (120-217)||(47186175-47186271)
chr3 (149-215)||(32319468-32319534)
chr3 (120-217)||(31187145-31187241)
chr3 (151-217)||(10179868-10179934)
chr3 (120-217)||(42664673-42664769)
chr3 (47-209)||(35094554-35094717)
chr3 (151-217)||(10018671-10018737)
chr3 (120-217)||(34029366-34029462)
chr3 (146-215)||(39498769-39498838)
chr3 (151-217)||(10123211-10123277)
chr3 (45-97)||(19619217-19619269)
chr3 (52-194)||(17466296-17466437)
[»] chr4 (16 HSPs)
chr4 (45-217)||(12473704-12473875)
chr4 (45-217)||(12528113-12528284)
chr4 (49-217)||(35869575-35869742)
chr4 (49-217)||(51811914-51812081)
chr4 (60-217)||(21260794-21260950)
chr4 (53-217)||(22343337-22343500)
chr4 (65-216)||(33249394-33249544)
chr4 (45-217)||(55590482-55590642)
chr4 (122-216)||(52910126-52910219)
chr4 (120-217)||(52012778-52012874)
chr4 (145-216)||(34829182-34829253)
chr4 (158-213)||(49998486-49998541)
chr4 (120-217)||(9799438-9799534)
chr4 (120-216)||(49999663-49999758)
chr4 (49-112)||(1796654-1796717)
chr4 (49-104)||(35781021-35781076)
[»] chr8 (7 HSPs)
chr8 (49-217)||(41179567-41179734)
chr8 (45-217)||(24337830-24338001)
chr8 (45-217)||(11254028-11254198)
chr8 (71-209)||(4708333-4708470)
chr8 (120-210)||(18168392-18168481)
chr8 (120-210)||(18631949-18632038)
chr8 (120-217)||(1514803-1514899)
[»] chr6 (7 HSPs)
chr6 (49-216)||(1211848-1212014)
chr6 (45-217)||(5403876-5404047)
chr6 (45-217)||(32644838-32645007)
chr6 (152-217)||(11753167-11753232)
chr6 (120-217)||(34245567-34245663)
chr6 (45-89)||(10503259-10503303)
chr6 (145-216)||(11113557-11113628)
[»] scaffold0519 (1 HSPs)
scaffold0519 (45-217)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (45-216)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (45-217)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (120-216)||(23174-23263)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 2569234 - 2569000
Alignment:
Q  18 gttccaacatccaaagtacgctgacaaatagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnn 117  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||||||||         
T  2569234 gttccaacatccaaagtacgctgacggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaa 2569135  T
Q  118 nntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
      |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2569134 a-tatatcaaataaagcatt-ggtaatgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T
Q  218 gcttaataatcatctacaacatgctcaaaaatgttattaa 257  Q
    ||| ||||   |||||||||||||||||||||||||||||    
T  2569036 gctcaata---atctacaacatgctcaaaaatgttattaa 2569000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||| ||||||| ||||| | ||||||| |||| |||||||||||||| ||  |||||||||||||       ||||||||||||||||| |  |||     
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatcta-taaa 29119422  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||| || ||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  29119423 gtaacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 32676305 - 32676136
Alignment:
Q  47 agcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgt 146  Q
    |||| |||||||  |||||| |||||||||||||||||||||| |||| ||  |||||||  ||||       |||||||||||||||||||  ||| ||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcattta-taaagt 32676207  T
Q  147 aacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||||  || | |||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  32676206 aacattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 8462276 - 8462129
Alignment:
Q  68 tatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacact 167  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||       ||||| ||||||| |||||  |||  ||||||||||||||||||||||    
T  8462276 tatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacattta-taaaataacattggtaggtggcacact 8462178  T
Q  168 gtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
     ||||||   ||||||||||| ||||||||| |||||  |||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtgg 8462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacattta-taaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 25161402 - 25161309
Alignment:
Q  123 atcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||| |||||  ||| ||||||||| |||||||||||||||||||||  |||| |||||| |||||  || ||||||||||||||||||    
T  25161402 atcaaataaaacattta-taaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtgg 25161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 46435465 - 46435556
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcat 136  Q
    |||| ||||||||| ||||||| |||||||||||| |||||||||||||||||  || ||||||||||       |||||||||||||||||    
T  46435465 ataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcat 46435556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 46435563 - 46435624
Alignment:
Q  156 aggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||| | |||| |||||||| |||  |||||| ||||||||||||||||||||||||||||    
T  46435563 aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 16679835 - 16679868
Alignment:
Q  183 tatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||| |||||||||||||||||||||||||||    
T  16679835 tatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 3688917 - 3689000
Alignment:
Q  124 tcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcatt-ggtaccttaatggt 207  Q
    ||||||||| |||||  ||| ||||||||||||||| | ||||| |||||||  |||||||||||| ||| |||| |||||||||    
T  3688917 tcaaataaaacattta-taaagtaacattggtaggttgtacactctaattggtcaatgatatatattattgggtatcttaatggt 3689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 35341692 - 35341536
Alignment:
Q  60 cataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggt 159  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||    
T  35341692 cataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattta-taaagtaacattggtaggt 35341594  T
Q  160 ggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||    
T  35341593 ggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtgg 35341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 48250327 - 48250154
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatg--gcacaccctttnnnnnnntatatcaaataaagcatttggta 142  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||  ||| |||||||        |||||||||||||||| |  ||    
T  48250327 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatcta-ta 48250229  T
Q  143 atgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    | ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  48250228 aagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 32694570 - 32694717
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    ||||||||||||||  |||||| |||||||||||| | |||||||||||||||| |||||||||||||       |||||||||||||| ||||  |||     
T  32694570 atagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaattt-ataaa 32694668  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcatt 193  Q
    ||||||||| ||| ||| ||||| |||||  | |||| |||||||||||    
T  32694669 gtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 31306868 - 31307046
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccct-----ttnnnnnnntatatcaaataaagcatttg 139  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||  |||||| |||| |||     ||       |  ||||||||||||||||     
T  31306868 atagcatttgtgtaccataatgatatatatcattgtccaattagaatgtaccacatgacacatcctataatttatttattttcatcaaataaagcattta 31306967  T
Q  140 gtaatgtaacattggtaggtggcacactgtaa-ttggcaaatgatatatatcattggtaccttaatggtacacaagtggg 218  Q
     ||| ||||||||||||||| ||||||| ||| ||||  ||||||||||||||||| ||| |||||||||||||| ||||    
T  31306968 -taaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaaatggg 31307046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 48072558 - 48072491
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 112  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||||    
T  48072558 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacacccttt 48072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  61 ataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 112  Q
    |||||| |||||| |||||||||||||||||||||||  |||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  153 ggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||| |||||| ||||||   ||| |||||||||||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 33858538 - 33858704
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||||       ||||||||||||| |||||  |||     
T  33858538 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattt-ataaa 33858636  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacaca 212  Q
    ||||||||||||||||||||||| |||||||  |||||||||||  ||||||||||||||||||||||    
T  33858637 gtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 11607534 - 11607705
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||       ||||||||||||| |||||  |||     
T  11607534 atagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacattt-ataaa 11607632  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||| |||||||||||||||||| |||||||  |||| |||||| ||||||||||||||||||| ||||||||    
T  11607633 gtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 19357262 - 19357432
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||| |||||       |||||||||||||||||||  |||     
T  19357262 atagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcattta-taaa 19357359  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||| |||||||||||||||||| |||||||| |||| |||||| |||||||||| |||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 33271785 - 33271630
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    ||||||||| |||| ||||||| ||||||| |||| |||||||||||||| ||| |||| || |||||       |||||||||||||||||||   ||     
T  33271785 atagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatcaa- 33271687  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtacctt 201  Q
    ||||||||| ||| || |||||| |||||||| ||||||||||||||||||||||||    
T  33271686 gtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 1826426 - 1826259
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    |||||||||| |||||||||||||| |||||| |||||| |||||| ||  |||||||  ||||       ||||||||||||||||| |   || ||||    
T  1826426 cacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaaa-gtaa 1826328  T
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
     ||||||||||| |||||| |||||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  1826327 tattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||||| | |||||| |||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 39570079 - 39570214
Alignment:
Q  81 ccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaat 180  Q
    ||||||||||| |||||  |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||| |||||| |||||||| |||    
T  39570079 ccaattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacattta-taaagtaacattggtaggtgacacactctaattggccaat 39570177  T
Q  181 gatatatatcattggtaccttaatggtacacaagtgg 217  Q
    | |||||| ||||| ||| |||||| |||||||||||    
T  39570178 ggtatataccattgatactttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||  ||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatattta-taaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacattta-taaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 13086824 - 13086753
Alignment:
Q  146 taacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  13086824 taacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 9827884 - 9827788
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||  ||||  ||| |||| |||||||||||| ||||| |||||| | || | |||||| ||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatattta-taaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||  ||||  ||| |||||| ||||| |||||||||| | |||||  |||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatattta-taaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 42148294 - 42148201
Alignment:
Q  68 tatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggc 162  Q
    ||||||||||||| |||||||||||||  || ||| |||||||||       ||||||||||||| |||||  ||| ||||||||||||||||||    
T  42148294 tatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacattt-ataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 25482742 - 25482786
Alignment:
Q  68 tatataccattgtccaattagaatgtgtcacatggcacacccttt 112  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||||    
T  25482742 tatataacattgcccaattaggatgtgccacatggcacacccttt 25482786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 34392081 - 34392252
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||| ||  |||||||||||||       |||||||||||||||||||  |||     
T  34392081 atagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcattta-taaa 34392179  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||| |||||||||||||||||| |||||||| |||| |||||| ||||||||||| ||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 23863803 - 23863958
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||  |||||||||||||       |||||||||||||||||||  |||     
T  23863803 atagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcattt-ataaa 23863901  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaa 203  Q
    ||||||||||||||||||||||| |||||| | |||   ||||| ||||||||||||||    
T  23863902 gtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 7381846 - 7381695
Alignment:
Q  61 ataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtg 160  Q
    |||||| ||||||| |||| ||||||| ||||||||||||| |||| |||||       |||||||||||||| ||||  ||| ||||||||||||| ||    
T  7381846 ataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaattta-taaagtaacattggtagatg 7381749  T
Q  161 gcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaag 214  Q
    ||||||| |||||||| |||  |||||| |||||||||||||||||||||||||    
T  7381748 gcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 37357917 - 37358092
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt----nnnnnnntatatcaaataaagcatttgg 140  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||||   |||            |||| |||||||||||||      
T  37357917 atagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt-a 37358015  T
Q  141 taatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||| ||||||||| |||||| |||||| ||||| |  |||| ||||||||||||||||||||||| |||||||||||    
T  37358016 taaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 4779752 - 4779635
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||| |||||       |||||||||||||| ||||  ||| ||||    
T  4779752 cacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtattt-ataaagtaa 4779654  T
Q  149 cattggtaggtggcacact 167  Q
    ||||| |||| ||||||||    
T  4779653 cattgttaggcggcacact 4779635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 21604055 - 21603959
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| ||||||||||||||||  ||||| |||||||  |||| |||||| ||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacattta-taaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 4775799 - 4775634
Alignment:
Q  52 ttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacat 151  Q
    ||||||| ||||||| |||||||||||||||||||| | |||| ||  ||||||| |||||       ||||| ||||||| || ||  ||| |||| ||    
T  4775799 ttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaataaagtaagat 4775700  T
Q  152 tggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||| ||  ||| | |||||||| ||| |||||||||||||||| |||||||||||| ||||||    
T  4775699 tggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtgg 4775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 21606210 - 21606149
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca 106  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  21606210 atagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 25275622 - 25275741
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    ||||||||| |||| ||||||| |||||| ||||||||||||||||||| |||| ||||||| |||||       |||||||||||||| ||||   ||     
T  25275622 atagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtattt--aaaa 25275719  T
Q  145 gtaacattggtaggtggcacac 166  Q
    ||||||||| ||||||||||||    
T  25275720 gtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 34904304 - 34904351
Alignment:
Q  169 taattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  34904304 taattagcaaatgatatataacattggtaccttaatgatacaaaagtg 34904351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 37742896 - 37742738
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||||| ||| |||||||| ||||       |||||||||||||||||| ||||||    
T  37742896 atagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcatt-ggtaat 37742798  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaat 204  Q
    ||||||||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||    
T  37742797 gtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 44380421 - 44380254
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||  ||| ||||    
T  44380421 cacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcattt-ataaagtaa 44380323  T
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
     |||| |||||| |||||| |||||||  |||  |||||| ||||||||||||||||||||||||||||    
T  44380322 tattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtgg 44380254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 33509854 - 33509684
Alignment:
Q  42 caaatagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggt 141  Q
    |||||||||||||||||  |||||| |||||| ||||||| |||||||||||| ||  ||||||| |||||       || |||||||||||||| |  |    
T  33509854 caaatagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatcta-t 33509756  T
Q  142 aatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaa 213  Q
    || |||| |||||||||||||||||| |||||||  |||||||||||  ||| |||||||||||||||||||    
T  33509755 aaagtaatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  70 tataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgt 169  Q
    |||||||||| |||||||||||||  ||  |||||||||||||       ||||||||||||||||| |  ||| ||||||||| |||||| |||||| |    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatcta-taaagtaacattgataggtgacacactct 47426398  T
Q  170 aattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||| |||| ||||||  |||||||||||||||||||||||||||    
T  47426397 aattggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||||||||| ||||||  ||| |||||||||||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcattta-taaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||||| | |||||| |||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagt 215  Q
    |||| |||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacattta-taaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 10179868 - 10179934
Alignment:
Q  151 ttggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||| |||||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 10179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  |||  ||||||||||| |||||||||| | |||||  |||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacattta-taaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 35094717 - 35094554
Alignment:
Q  47 agcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgt 146  Q
    |||| ||||||| ||||||| ||| || |||||||||||||||||||||||| || |||| |||||       |||||||||||||  ||||  ||| ||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatattt-ataaagt 35094619  T
Q  147 aacattggtaggtggc--acactgtaattggcaaatgatatatatcattggtaccttaatggtac 209  Q
    ||||||||||||||||  || || ||||| |  |||| |||||| || |||||| ||||||||||    
T  35094618 aacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 10018671 - 10018737
Alignment:
Q  151 ttggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||| | |||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtgg 10018737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| |||||||| ||| |||||||||| | ||||   |||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacattta-taaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 39498769 - 39498838
Alignment:
Q  146 taacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagt 215  Q
    |||||| | |||||| |||||| |||||| | ||| ||||||||||||||||| ||||||||||||||||    
T  39498769 taacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 10123211 - 10123277
Alignment:
Q  151 ttggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||| | |||| | | ||||||||| ||||| ||| ||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtgg 10123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 19619269 - 19619217
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtca 97  Q
    ||||||| |||||| ||||||| |||||||||||| ||||||| |||||||||    
T  19619269 atagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 17466437 - 17466296
Alignment:
Q  52 ttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacat 151  Q
    ||||||| | ||||| ||||||||||||  || ||||| ||||  || ||||| |||||||       |||||||| |||| |||||  ||| |||||||    
T  17466437 ttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcattta-taaagtaacat 17466339  T
Q  152 tggtaggtggcacactgtaattggcaaatgatatatatcattg 194  Q
    || |||||| |||||| |||||| | ||||||||||| |||||    
T  17466338 tgataggtgacacactctaattgaccaatgatatataccattg 17466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 12473875 - 12473704
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||||||||  || ||||||||||       ||||||||||||||||| |  |||     
T  12473875 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatcta-taaa 12473777  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||| ||||||||    
T  12473776 gtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 12528284 - 12528113
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||||||||  || ||||||||||       ||||||||||||||||| |  |||     
T  12528284 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatcta-taaa 12528186  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||| ||||||||    
T  12528185 gtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 35869575 - 35869742
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    ||||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||       ||||||||||||| |||||  ||  ||||    
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattta-tatagtaa 35869673  T
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||| | |||||||  |||| |||||| ||||||||||||||||||||||||||||    
T  35869674 cattggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 51812081 - 51811914
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||       ||||||||| |||  ||||  ||| ||||    
T  51812081 cacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaattt-ataaagtaa 51811983  T
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||| ||| |||||||| ||| ||||||||| ||| |||||||||||||||| |||||    
T  51811982 cattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtgg 51811914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 21260950 - 21260794
Alignment:
Q  60 cataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggt 159  Q
    ||||||| |||||| ||||  |||||||||||||| ||  |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacattta-taaagtaacattggtaggt 21260852  T
Q  160 ggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    | |||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  21260851 gacacactctaattggccaatgatatatatcattggtaccttaatggtatataagtgg 21260794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 217
Target Start/End: Complemental strand, 22343500 - 22343337
Alignment:
Q  53 tgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacatt 152  Q
    |||||| ||||||| |||||| |||||| ||||||||||||||||  ||||||| |||||       |||||||||||||||||||  ||| ||||||||    
T  22343500 tgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcattta-taaagtaacatt 22343402  T
Q  153 ggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    | ||| || |||||| |||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  22343401 gatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 33249394 - 33249544
Alignment:
Q  65 tgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcac 164  Q
    ||||||||| |||||  |||||||| |||| ||  |||||||||||||       |||||||||||||||||||  ||| |||||||||||||||| |||    
T  33249394 tgatatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcattta-taaagtaacattggtaggtgacac 33249492  T
Q  165 actgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    ||| |||||||| |||  |||||| |||| ||||||||||||||||||||||    
T  33249493 actctaattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 55590642 - 55590482
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||| ||| ||||||| ||||| |||||| |||||||||||||||||| ||||||| |||||       ||||||||||||||               
T  55590642 atagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag----------- 55590554  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
     ||||||||||||||| |||||| ||||||   ||||||||||| ||||||||||||||||||||||||||||    
T  55590553 -taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  122 tatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||||||||||||||  ||| |||| |||||||||||||||||| |||||||| |||| |||||| |||||||||| | ||||||||||||||    
T  52910126 tatcaaataaagcattta-taaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacattta-taaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 34829182 - 34829253
Alignment:
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||||| ||||| |||||    
T  34829182 gtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtg 34829253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  158 gtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaa 213  Q
    |||||||||  |||||||| |||||||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||| ||||||| |||||  ||| |||||||||||| |||||||| | |  ||||  |||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacattta-taaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||||||||||||||||  |||  ||||||||||| ||| |||||| |||||| | ||||| | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcattta-taaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 1796717 - 1796654
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 112  Q
    |||||||||| ||||||| |||||||||||||||||||| | |||| ||| || |||| |||||    
T  1796717 cacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 35781076 - 35781021
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggca 104  Q
    |||||| ||| ||||||| |||||||||||| |||||||||||||| ||| |||||    
T  35781076 cacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 217
Target Start/End: Original strand, 41179567 - 41179734
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||| ||  ||||||| || ||       ||||| ||||||| |||||  ||| ||||    
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacattta-taaagtaa 41179665  T
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41179666 catcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 24337830 - 24338001
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||  |  |||||||||||||       ||||||||||||||||| |  |||     
T  24337830 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatct-ataaa 24337928  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| ||||||||| |||||| |  ||| |||||| ||||| ||||||||| ||||||||||||    
T  24337929 gtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 11254028 - 11254198
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||| ||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||       ||||||||||||| |||||  |||     
T  11254028 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacattt-ataaa 11254126  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||| | ||| ||| |||  ||||||||||||||||||||  ||||||||||||||||||    
T  11254127 gtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtgg 11254198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 4708333 - 4708470
Alignment:
Q  71 ataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgta 170  Q
    ||||||||| | |||||||||||| ||| |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||| |||||| ||    
T  4708333 ataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacattta-taaagtaacattggtaggtgacacacttta 4708431  T
Q  171 attggcaaatgatatatatcattggtaccttaatggtac 209  Q
    ||||||  |||||||||  ||||||||||||| ||||||    
T  4708432 attggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 18168481 - 18168392
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtaca 210  Q
    |||||||||||||| ||||  ||| |||| |||||||||||| ||||| ||||||   ||||||||||| |||||||||||||||||||||    
T  18168481 tatatcaaataaagtattta-taaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 18632038 - 18631949
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtaca 210  Q
    |||||||||||||| ||||  ||| |||| |||||||||||| ||||| ||||||   ||||||||||| |||||||||||||||||||||    
T  18632038 tatatcaaataaagtattta-taaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||| |||||  ||| |||||||||||| |||| ||||| | ||||   |||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacattta-taaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 216
Target Start/End: Original strand, 1211848 - 1212014
Alignment:
Q  49 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 148  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||| ||| |||||||||||||       |||||||||||||||| | | ||| ||||    
T  1211848 cacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagca-tcgataaagtaa 1211946  T
Q  149 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||  |||||||||||  ||||| || |||| |||||| |||||||||||||||||||||||||||    
T  1211947 cattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 5403876 - 5404047
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||  || ||||||       ||||||||||||| ||| |  |||     
T  5403876 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatct-ataaa 5403974  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||||| ||| ||| || | ||| ||||||| |||| |||||||||||||||||||||||    
T  5403975 gtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 32644838 - 32645007
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||| ||| |||  |||||||||||||       |||| ||||||||| ||||  |||     
T  32644838 atagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtattt--taaa 32644934  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||| ||||||| |||||  |||||||| |||||||||||  || | || |||||||||||||| ||||    
T  32644935 gtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtgg 32645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 11753232 - 11753167
Alignment:
Q  152 tggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||| ||||| ||||||||  ||| |||||| ||||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtgg 11753167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtattta-taaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 10503259 - 10503303
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattaga 89  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  10503259 atagcacttgtgtaccataatggtatataccattgtccaattaga 10503303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 11113628 - 11113557
Alignment:
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||||| ||| ||| |||||| | ||| |  |||| |||||| |||||||||||||||||||||||||||    
T  11113628 gtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 11365 - 11195
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||| ||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||       ||||||||||||| |||||  |||     
T  11365 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacattt-ataaa 11267  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    ||||||||||||||||| | ||| ||| |||  ||||||||||||||||||||  ||||||||||||||||||    
T  11266 gtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtgg 11195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 13005 - 13176
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca-ccctttnnnnnnntatatcaaataaagcatttggtaa 143  Q
    |||||||||||||| ||||||| |||||||||||| || ||||||||||| ||| ||||||| ||||||       |||||||||||||||||  | |||    
T  13005 atagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatc-gataa 13103  T
Q  144 tgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
     |||||||||  |||||||||||  ||||| || |||| |||||| |||||||||||||||||||||||||||    
T  13104 agtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 34363 - 34194
Alignment:
Q  45 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 144  Q
    |||||| ||||||| ||||| | |||||| |||| ||||||||||||||||||| || ||||||||||       |||||||||||||  ||||  |||     
T  34363 atagcatttgtgtaccataagg-tatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatattta-taaa 34267  T
Q  145 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 217  Q
    |||| ||||||| |||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  34266 gtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtgg 34194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  120 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 216  Q
    |||||||||||||  ||||  ||| |||| |||||||||||||||||| |||||||| ||||||||||       ||||||||||||||||||||||    
T  23174 tatatcaaataaaatattta-taaagtaaaattggtaggtggcacactctaattggccaatgatatatc------gtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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