View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_61 (Length: 220)
Name: NF19915_low_61
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 31428069 - 31428219
Alignment:
| Q |
16 |
aagaacaagggatttgagaggatgatgaactgagaaagtggaagctagcaataacataatagtataactgaaaatggaattaactgcttgaataggagct |
115 |
Q |
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| T |
31428069 |
aagaacaagggatttgagaggatgatgaactgagaaagtggaagctagcaataacataatagtataactgaaaatggaattaactgcttgaagaggagct |
31428168 |
T |
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| Q |
116 |
ggaagaagcagcacatgnnnnnnngtgagcaaaaatataatgaaattaaaa |
166 |
Q |
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| T |
31428169 |
ggaagaagcagcacatgaaaaaaagtgagcaaaaatataatgaaattaaaa |
31428219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 31428250 - 31428289
Alignment:
| Q |
163 |
aaaatcatgtgttgaattaactcactaactacgaatgcaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31428250 |
aaaatcatgtgttgaattaactcactaactacgaatgcaa |
31428289 |
T |
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