View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_9 (Length: 535)
Name: NF19915_low_9
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 279 - 524
Target Start/End: Complemental strand, 44552515 - 44552271
Alignment:
| Q |
279 |
tcaaccaacccattttaattacaaatatagggcaccaagtttatcccgatagcggtcataactacacatattatccgcgagtctagccaaataacgaaag |
378 |
Q |
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| T |
44552515 |
tcaaccaacccattttaattacaaatatagggcaccaagtt-atcccgatagcggtcataactacacacattatccgcgagtctaaccaaataacgaaag |
44552417 |
T |
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| Q |
379 |
acacaactggtttttgtaggtcacgttcatggtcaatagaattacgagttatgtcacattatctaattatcacttgtaattatttttaaacgcaccctta |
478 |
Q |
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| T |
44552416 |
acacaactagtttttgtaggtcacgttcatggtcaatagaattacgagttatgtcacattatctaaatatcacttgtaattatttttaaacgcaccctta |
44552317 |
T |
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| Q |
479 |
atcactgcaaaagaagatacttaatttaaaatgtagtaggtttcat |
524 |
Q |
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| T |
44552316 |
atcactgcaaaagaagatacttaatttaaaacgtagtaggtttcat |
44552271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 44552773 - 44552540
Alignment:
| Q |
46 |
tctccattttttcatcttatttcatctcttattgttcatcttgatgatcatgttcatcaatcttcttcaaagaaacccaggtaaaaacacttgcaccttc |
145 |
Q |
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| T |
44552773 |
tctccattttttcatcttattccatctcttattgttcatcttgatgatcatgttcatcaatcttcttcaaagaaccccaggtaaaaacacttacaccttc |
44552674 |
T |
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| Q |
146 |
ttcgtaatttctttccacaacttatcacataagtttcaatttccttatcatttctttccacaactagccacaatcttatatcctcccttcctcacaaaat |
245 |
Q |
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| T |
44552673 |
ttcgtaatttatttccacaacttatcacataaggctcaatttccttatcatttctttccacaactacccacaatcttatatcctcccttcctcacaaaat |
44552574 |
T |
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| Q |
246 |
gcagccatcaataaactatagctaacaatccatt |
279 |
Q |
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| T |
44552573 |
gcagccatcaataaactatagctaacaatccatt |
44552540 |
T |
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