View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_high_17 (Length: 383)
Name: NF19916_high_17
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 32614495 - 32614156
Alignment:
| Q |
17 |
tggttaatgtgatctcaattttagccgcgatgcagttgcaaagacttcaaaattctttaaaagcacttgtttacacttagtaaacgatatcggccattaa |
116 |
Q |
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| T |
32614495 |
tggttaatgtgatctcaatattagtcgcgatacagttgcaaagacttcaaaattctttaaaagcacttgtttacacttggtaaactatatcggccattaa |
32614396 |
T |
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| Q |
117 |
tttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatctcaatcattaatttgagatttgagatcagatagtcatattaaattat |
216 |
Q |
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| T |
32614395 |
tttgacatcggacaaatcaaattacacaataacaaaatcaactttaaacgatctcaatcattaatttgagat-------cagatagtcatattaaatt-- |
32614305 |
T |
|
| Q |
217 |
gtttggcgtagtaaatacaccaaatccaaatttaaaactatgattcactaaactatacagatctttttactatatcatgaaaataatgttcaaatatgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32614304 |
-tttggcgtagtaaatacaccaaatccaaatttaaaactatgattcactaaactatacagatctttttacgatatcatgaaaataatgttcaaatatgaa |
32614206 |
T |
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| Q |
317 |
gtatctgtttgttggtatatataataatgtttggcctttgataggctttg |
366 |
Q |
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| T |
32614205 |
gtatctgtttgttagtatatataataatgtttggcctttgataggctttg |
32614156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 30241519 - 30241592
Alignment:
| Q |
97 |
taaacgatatcggccattaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatctc |
171 |
Q |
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| T |
30241519 |
taaacgatcttgaccattaatctgaaatcagacatctcagattacacaataacaaaa-caactttaaacgatctc |
30241592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 50488231 - 50488179
Alignment:
| Q |
137 |
attacacaataacaaaatcaactttaaacgatctcaatcattaatttgagatt |
189 |
Q |
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| T |
50488231 |
attacacaataccaaaatcaattttaaacgatctcgactgttaatttgagatt |
50488179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 23344106 - 23344163
Alignment:
| Q |
113 |
ttaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatct |
170 |
Q |
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| T |
23344106 |
ttaatttgagatcggacaattcagattacacaataacaaaatcaagtttaaacgatct |
23344163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 30000755 - 30000664
Alignment:
| Q |
97 |
taaacgatatcggccattaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatctcaatcattaatttgagat |
188 |
Q |
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|||||||| || ||||||||||||||| ||||| |||||||||| |||||||||||| || |||| ||||| | | |||||||||||| |
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| T |
30000755 |
taaacgatctcagccattaatttgaaaccagactgtccaaattacacgataacaaaatcattttcaaacaatctcgaccgttaatttgagat |
30000664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 18169927 - 18169971
Alignment:
| Q |
113 |
ttaatttgaaatcagacaaatcaaattacacaataacaaaatcaa |
157 |
Q |
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| T |
18169927 |
ttaatttaaaatcagacggctcaaattacacaataacaaaatcaa |
18169971 |
T |
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