View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_high_18 (Length: 380)
Name: NF19916_high_18
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 64 - 361
Target Start/End: Complemental strand, 48210841 - 48210544
Alignment:
| Q |
64 |
aatttatattaaaaatagtacgattgtacttaaacgcaatacatccaatatccaaagtttaaaagaagacacaatacaaccacactaaaaataagaccac |
163 |
Q |
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| T |
48210841 |
aatttatattaaaaatagtacgattgtacttaaacgcaatacatccaatatccaaagtttaaaagaagacacaatacaaccacactaaaaataagaccac |
48210742 |
T |
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| Q |
164 |
aatgcaattaaataaagaaaaaccaaagaacacataggagacacaatacaagtaagtaaaattcaagaacacatccaaatgagaaaatagttggatccat |
263 |
Q |
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| T |
48210741 |
aatgcaattaaataaagaaaaaccaaagaacacataggagacacaatacaagtaagtaaaattcaagaacacatccaaatgagaaaatagttggatccat |
48210642 |
T |
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| Q |
264 |
ggccacattgaacttaaaattctgcacttccactttcgcttgcaccagcaaggttgaggagtccttgtgtttgatttgctgctagtccaggagaagca |
361 |
Q |
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| T |
48210641 |
ggccacattgaacttaaaattctgaacttccactttcacttgcaccagcaaggttgaggagtccttgtgtttgatttgctgctagtccaggagaagca |
48210544 |
T |
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