View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_high_25 (Length: 299)

Name: NF19916_high_25
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_high_25
NF19916_high_25
[»] chr5 (4 HSPs)
chr5 (1-283)||(24400976-24401257)
chr5 (191-283)||(24409372-24409464)
chr5 (129-161)||(8297853-8297885)
chr5 (125-161)||(26405214-26405250)
[»] chr3 (3 HSPs)
chr3 (194-283)||(32772142-32772231)
chr3 (125-161)||(4171123-4171159)
chr3 (125-161)||(50518755-50518791)
[»] chr1 (2 HSPs)
chr1 (126-161)||(7451927-7451962)
chr1 (126-161)||(31290687-31290722)
[»] chr7 (2 HSPs)
chr7 (124-161)||(33719343-33719380)
chr7 (125-161)||(6726085-6726121)
[»] scaffold0050 (1 HSPs)
scaffold0050 (125-161)||(37086-37122)
[»] chr6 (2 HSPs)
chr6 (125-161)||(3880278-3880314)
chr6 (125-161)||(20701463-20701499)
[»] chr4 (1 HSPs)
chr4 (125-161)||(42719535-42719571)
[»] chr2 (1 HSPs)
chr2 (125-161)||(13337629-13337665)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 24400976 - 24401257
Alignment:
Q  1 gtgtgagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcataagttggtaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24400976 gtgtaagtggttgttggttccttatggcatgtgtgtaaaataaacgtgatcaacaaccagcaactaagggcactttagcaaataagcataagttggtaaa 24401075  T
Q  101 tatcctgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcctgatgaaatcatgatattttattttatagatact 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24401076 tatc-tgataacaataaaaatgagtttgtttgtattctcagtctcaccggtctctgttcgtattcttgatgaaatcatgatattttattttatagatact 24401174  T
Q  201 gagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatag 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24401175 gagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatag 24401257  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 24409372 - 24409464
Alignment:
Q  191 tatagatactgagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatag 283  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24409372 tatagatactaagcaatgggaaatataaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatag 24409464  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 8297853 - 8297885
Alignment:
Q  129 tttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||| ||||||||||||||||||    
T  8297853 tttgtattctcagtttcaccggtctctgttcgt 8297885  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 26405250 - 26405214
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||||||| |||||||    
T  26405250 tttgtttgtattctcagtttcaccggtctttgttcgt 26405214  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 32772142 - 32772231
Alignment:
Q  194 agatactgagcaatggaaaatataaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatag 283  Q
    ||||| |||||||||||||||| |||||| |||| |||||||||||||||| ||||||||  |||||||| || ||||||||||||||||    
T  32772142 agataatgagcaatggaaaatacaaggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatag 32772231  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 4171123 - 4171159
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4171123 tttgtttgtattctcagtttcaccggtctctgttcgt 4171159  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 50518791 - 50518755
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50518791 tttgtttgtattctcagtttcaccagtctctgttcgt 50518755  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 7451962 - 7451927
Alignment:
Q  126 ttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7451962 ttgtttgtattctcagtttcaccggtctctgttcgt 7451927  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 31290722 - 31290687
Alignment:
Q  126 ttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31290722 ttgtttgtattctcagtctcaccagtctctgttcgt 31290687  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 33719343 - 33719380
Alignment:
Q  124 gtttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  33719343 gtttgtttgtattctcagtttcaccgatctctgttcgt 33719380  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 6726121 - 6726085
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||| |||||||||||    
T  6726121 tttgtttgtattctcagtttcaccgatctctgttcgt 6726085  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 37086 - 37122
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  37086 tttgtttgtattatcagtttcaccggtctctgttcgt 37122  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 3880314 - 3880278
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  3880314 tttgtttgtattttcagtttcaccggtctctgttcgt 3880278  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 20701499 - 20701463
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||| |||||||||||    
T  20701499 tttgtttgtattctcagtttcaccgatctctgttcgt 20701463  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 42719535 - 42719571
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    |||||||||||||||||| |||||||||||| |||||    
T  42719535 tttgtttgtattctcagtttcaccggtctctattcgt 42719571  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 13337629 - 13337665
Alignment:
Q  125 tttgtttgtattctcagtctcaccggtctctgttcgt 161  Q
    ||||||||||||||| || ||||||||||||||||||    
T  13337629 tttgtttgtattctctgtttcaccggtctctgttcgt 13337665  T

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