View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19916_high_26 (Length: 294)
Name: NF19916_high_26
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 11472717 - 11472995
Alignment:
| Q |
2 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11472717 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
11472816 |
T |
|
| Q |
102 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggagaaatgtgtcttttgcacggatcatgtaannnnnnnaggtt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
11472817 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggaaaaatgtgtcttttgcacggatcatgtaatttttttaggtt |
11472916 |
T |
|
| Q |
202 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11472917 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
11472995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 13182889 - 13182611
Alignment:
| Q |
2 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13182889 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttctaggaacattgt |
13182790 |
T |
|
| Q |
102 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggagaaatgtgtcttttgcacggatcatgtaannnnnnnaggtt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
13182789 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggaaaaatgtgtcttttgcacggatcatgtaatttttttaggtt |
13182690 |
T |
|
| Q |
202 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13182689 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
13182611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 15385065 - 15385343
Alignment:
| Q |
2 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
101 |
Q |
| |
|
|||||| ||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
15385065 |
gagactaatgaaccatattttgagagaatttttgggtaaatttgttgttgtgtattttgatgatatcttaatatatagcaaaaatttagaggaccattgc |
15385164 |
T |
|
| Q |
102 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggagaaatgtgtcttttgcacggatcatgtaannnnnnnaggtt |
201 |
Q |
| |
|
||| ||||||||||||||| |||| |||||| ||||| |||||| ||||||||| || ||||||||||||||||| |||||||| | ||||| |
|
|
| T |
15385165 |
attcacttaagggctgttttacaagtgttaagacaagaaaatttgtatgcaaatttagaaaaatgtgtcttttgcaccgatcatgtgattttcttaggtt |
15385264 |
T |
|
| Q |
202 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
280 |
Q |
| |
|
| |||||||||| |||||| ||||||| |||||| ||||| | |||||| | || |||||| ||||||||||||| |
|
|
| T |
15385265 |
tcattgtaagctctaagggagtccatgttgatgaaagcaaggtgaaagcaattcaagaatggccaacacccaaaaatgt |
15385343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 13959673 - 13959395
Alignment:
| Q |
2 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
101 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
13959673 |
gagactaatgaaccatgttttgagagaatttttgggtaaatttgttgttgtgtattttgatgatatcttaatatatagcaaaaatttagaggaccattgc |
13959574 |
T |
|
| Q |
102 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggagaaatgtgtcttttgcacggatcatgtaannnnnnnaggtt |
201 |
Q |
| |
|
||| ||||||||||||||| |||| |||||| ||||| |||||| | ||||||| || ||||||||||||||||| |||||||| | ||||| |
|
|
| T |
13959573 |
attcacttaagggctgttttacaagtgttaagacaagaaaatttgtatacaaatttagaaaaatgtgtcttttgcaccgatcatgtgattttcttaggtt |
13959474 |
T |
|
| Q |
202 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
280 |
Q |
| |
|
| |||||||||| || ||| ||||||| |||||| ||||| | |||||| | || |||||| ||||||||||||| |
|
|
| T |
13959473 |
tcattgtaagctctaaaggagtccatgttgatgaaagcaaggtgaaagcaattcaagaatggccaacacccaaaaatgt |
13959395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 280
Target Start/End: Complemental strand, 21462651 - 21462374
Alignment:
| Q |
2 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21462651 |
gagactcatgaaccatgtcttgagggaatttttgggaaaatttgttgttgtgtattttgatgatatcttgatatatagcaaaaatttagaggaacattgt |
21462552 |
T |
|
| Q |
102 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggagaaatgtgtcttttgcacggatcatgtaannnnnnnaggtt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||| |||||| ||||| |
|
|
| T |
21462551 |
ggtcatttaagggctgttttagaagttttaagaaaagaacatttgtttgcaaatttggaaaaatttgtcttttccacagat-atgtaatttttttaggtt |
21462453 |
T |
|
| Q |
202 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaaggtaagagcaatcaaggattggccaccacccaaaaatgt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21462452 |
ttgttgtaagctccaagggaatccatgtggatgaagaaaatgtaagagcaatcaaggattggccaccacccaaaaatgt |
21462374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 2407463 - 2407418
Alignment:
| Q |
39 |
aaatttgttgttgtgtattttgatgatatcttgatatatagcaaaa |
84 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| |||||||||| |
|
|
| T |
2407463 |
aaatttgttgttgtgtacttcgatgatattttgatctatagcaaaa |
2407418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University