View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19916_high_30 (Length: 272)
Name: NF19916_high_30
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 233303 - 233539
Alignment:
| Q |
1 |
gtctgatattatggtaaagtaattaacacattcaatgcaataatgtaaataaataaattaacctaagctagctacattttattgcatgtcggttgcaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
233303 |
gtctgatattatggtaaagtaattaacacattcaatgcaataatgtaaataaataaattaacctaagctagctacattttattgcatgtcggttgcaaga |
233402 |
T |
|
| Q |
101 |
ttcgctgagctcttataacctttaatgcacactttatttattttttagctagctagccctaaaatgcaatgcaagtgtattaaatagtaacccctgattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
233403 |
ttcgctgagctcttataacctttaatgcacactttatttattttttagctagctagccctaaaatgcaatgcaagtgtattaaatagtaacccctgattt |
233502 |
T |
|
| Q |
201 |
tattcttcaattgaagtatcacgactcattttacagc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
233503 |
tattcttcaattgaagtatcacgactcattttacagc |
233539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University