View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_high_34 (Length: 260)
Name: NF19916_high_34
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 10029461 - 10029224
Alignment:
| Q |
15 |
acattcctccttattcatggacatgtagcaaacctttcagtttatgtaaatgtggcaatcatgttacatgtactagacatgttttgaattgaattcaact |
114 |
Q |
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| T |
10029461 |
acattcctccttattcatggacatgtagcaaacctttcagtttatgtaaatgtggcaatcatgttacatgtactagacatgttttgaattgaattcaact |
10029362 |
T |
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| Q |
115 |
tatataagaatttacacaaaatccaaattgtgatcacatgcacgttattaaatatatataattttggtgaatgtttgtttgtttacctttaaatggaaag |
214 |
Q |
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| T |
10029361 |
tatataagaatttacagaaaatccaaattgtgatcacatgcacgttattaaatatatatagttttggtgaatgtttgtttgtttacctttaaatagaaag |
10029262 |
T |
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| Q |
215 |
acacaagaaaaaagattaaattgcattccgcctttgct |
252 |
Q |
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| T |
10029261 |
acacaagaaaaaagattaaattgcattccgcttttgct |
10029224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 10051374 - 10051137
Alignment:
| Q |
15 |
acattcctccttattcatggacatgtagcaaacctttcagtttatgtaaatgtggcaatcatgttacatgtactagacatgttttgaattgaattcaact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10051374 |
acattcctccttattcatggacatgtagcaaacctttcagtttatgtaaatgtggcaatcatgttacatgtactagacatgttttgaattgaattcaact |
10051275 |
T |
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| Q |
115 |
tatataagaatttacacaaaatccaaattgtgatcacatgcacgttattaaatatatataattttggtgaatgtttgtttgtttacctttaaatggaaag |
214 |
Q |
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| T |
10051274 |
tatataagaatttacagaaaatccaaattgtgatcacatgcacgttattaaatatatatagttttggtgaatgtttgtttgtttacctttaaatagaaag |
10051175 |
T |
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| Q |
215 |
acacaagaaaaaagattaaattgcattccgcctttgct |
252 |
Q |
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| T |
10051174 |
acacaagaaaaaagattaaattgcattccgcttttgct |
10051137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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