View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19916_high_6 (Length: 513)
Name: NF19916_high_6
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_6 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 4 - 513
Target Start/End: Complemental strand, 38095594 - 38095085
Alignment:
| Q |
4 |
gggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaat |
103 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
38095594 |
gggtaaattacactcacattccttgaggttttcttaaataatacaaacaccccctctagttttaaactaaacgcaaacctcccttaatttttattcatat |
38095495 |
T |
|
| Q |
104 |
ctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatggaaggatcaaaggaaat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38095494 |
ctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatgaaaggatcaaaggaaat |
38095395 |
T |
|
| Q |
204 |
nnnnnnnntacgtaaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtga |
303 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095394 |
aaaaaaaatacgtaaaagcaataacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtga |
38095295 |
T |
|
| Q |
304 |
agtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095294 |
agtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcgattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc |
38095195 |
T |
|
| Q |
404 |
ttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38095194 |
ttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaa |
38095095 |
T |
|
| Q |
504 |
tgcaggaatc |
513 |
Q |
| |
|
|||||||||| |
|
|
| T |
38095094 |
tgcaggaatc |
38095085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 26789105 - 26788944
Alignment:
| Q |
32 |
ttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacaccacccctatcatgtaaca |
131 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26789105 |
ttttcttaaatagcacaaacaccccctctagtttttaactaaacacaaacctcccttaatttttattcaaatctacaaacaccacccctatcatgtaaca |
26789006 |
T |
|
| Q |
132 |
ccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatggaaggat |
193 |
Q |
| |
|
| ||||||||| ||||||| |||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
26789005 |
ctgttagttctgtgttaacacagcttcattgtcgaacaaactcaatggattaatggaaggat |
26788944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 2507407 - 2507495
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttatt |
98 |
Q |
| |
|
|||| |||||||| | |||||||||||||||| || || || ||||| |||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
2507407 |
attacactcacctcctttgaggttttcttaaaaaacgccaataccccatctaattttaaactaaacactaatctcccttaagttttatt |
2507495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 26788842 - 26788803
Alignment:
| Q |
285 |
cttagcttttgaggcgtgaagtttgatgcctaaacgtgat |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26788842 |
cttagcttttgaggcgtgaagtttgatccctaaacgtgat |
26788803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 10350669 - 10350714
Alignment:
| Q |
47 |
caaacaccccctctaattttaaactaaacacaaacctcccttaatt |
92 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
10350669 |
caaacaccccctctagttttaaacttaacacccacctcccttaatt |
10350714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 149618 - 149574
Alignment:
| Q |
54 |
cccctctaattttaaactaaacacaaacctcccttaatttttatt |
98 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
149618 |
cccctctagttttcaactaaacacaaacctcccttgaattttatt |
149574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 26179695 - 26179316
Alignment:
| Q |
15 |
actcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacacc |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26179695 |
actcacctcccttgaggttttcttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctttatttttattcaaatctacaaacacc |
26179596 |
T |
|
| Q |
115 |
acccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatggaaggatcaaaggaaatnnnnnnnn--t |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| | |
|
|
| T |
26179595 |
acccctatcatgtaacactgttagttctctgttaactaagcttccttgtctaacaagctaaatgtattaatggaaggatcaaatgaaataaaaaaaaaat |
26179496 |
T |
|
| Q |
213 |
acgtaaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatg |
312 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26179495 |
acgtaaaagcaataacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatg |
26179396 |
T |
|
| Q |
313 |
cctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattg |
392 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26179395 |
cctaaacgtgatagatattcaattttaggatgaaggaagcgattgtaattcacatcaacataataaagttggatgaattg |
26179316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 293 - 496
Target Start/End: Original strand, 2757878 - 2758080
Alignment:
| Q |
293 |
ttgaggcgtgaagtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattg |
392 |
Q |
| |
|
|||| ||||||||||||||| |||||| | ||||||||||||| || |||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2757878 |
ttgaagcgtgaagtttgatgtctaaacataataaatattcaatatttggatgaagcaagtgattttaattcacatcaacataataaagttggatgaattg |
2757977 |
T |
|
| Q |
393 |
cttaatgttgcttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaaga |
492 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||| || ||||||||||| ||||| || ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2757978 |
cttaatgttgcttttgtagaattggagaaggaagtgaattgatagaaactg-aaattctaagttgaaaaactagataaaccaaattcaagaggatgaaga |
2758076 |
T |
|
| Q |
493 |
ataa |
496 |
Q |
| |
|
|||| |
|
|
| T |
2758077 |
ataa |
2758080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 2757739 - 2757867
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaa |
109 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||| | |||| ||||||||||||| || ||||||| || ||| |||||||||||| |||| ||||| |
|
|
| T |
2757739 |
attacactcacctcccttgaggtcttcttaaataacactaacatcccctctaatttttaattaaacacttacatccattaatttttatttaaatttacaa |
2757838 |
T |
|
| Q |
110 |
acaccacccctatcatgtaacaccgttag |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
2757839 |
gcacctcccctatcatgtaacaccgttag |
2757867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 2758539 - 2758461
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctt |
88 |
Q |
| |
|
|||| |||||||| |||| |||| ||||||||||| | |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
2758539 |
attacactcacctcccttaaggtcttcttaaataacactaacatcccctctaattttaaactaaacactaacctccctt |
2758461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 38356880 - 38356946
Alignment:
| Q |
47 |
caaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacac |
113 |
Q |
| |
|
||||||||||||||| ||||||| | ||| |||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
38356880 |
caaacaccccctctagttttaaaacatacattaacctcccttaagttttaatcaaatatacaaacac |
38356946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 217 - 497
Target Start/End: Complemental strand, 47955836 - 47955558
Alignment:
| Q |
217 |
aaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatgccta |
316 |
Q |
| |
|
||||| || |||||||| || ||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
47955836 |
aaaaggaataacaatgattatcttctacctagtgaaaaatggattaatggaaagaactgaaataaaacctcagcttttgaggcgtgaagtttgatgc-tc |
47955738 |
T |
|
| Q |
317 |
aacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgcttttggacaatta |
416 |
Q |
| |
|
||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||| | |||| |
|
|
| T |
47955737 |
aacataaaaaatattcaattttaggatgaaggaagtgattgtaattcacatcaacataataaaattggatgaattgcttaacgtggcttttgcagaattg |
47955638 |
T |
|
| Q |
417 |
gagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataat |
497 |
Q |
| |
|
||||||||| | ||| ||| ||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
47955637 |
gagaaggaattagatagattgaaactg-aaattctaggttgaaaaaatagataaaccaaattcaagaggatgaagaataat |
47955558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 47956182 - 47956012
Alignment:
| Q |
4 |
gggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaat |
103 |
Q |
| |
|
||||| |||| |||||||| |||||||| |||||||||| | ||||||||||||| ||| ||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
47956182 |
gggtaaattacactcacctctcttgaggtcttcttaaatagcactaacaccccctctagtttaaaactaaacactaatctcccttaatttttaatcaaat |
47956083 |
T |
|
| Q |
104 |
ctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaacta |
174 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| || |||||| |
|
|
| T |
47956082 |
ctacaaacaccacccctgtcatgtaacaccgttggttctctgttaacttagcttccttgtcgaaaaaacta |
47956012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 35898871 - 35898970
Alignment:
| Q |
49 |
aacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacaccacccctatcatgtaacaccgttagttctctgtta |
148 |
Q |
| |
|
||||||||||||| |||| |||| ||||| ||||||||||| ||||||||||||| |||| |||| ||| | ||| || ||||||||| ||||||||| |
|
|
| T |
35898871 |
aacaccccctctattttttaactcaacactaacctcccttattttttattcaaatagacaaccacctcccttttcacttagcaccgttag-tctctgtta |
35898969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 18753830 - 18753730
Alignment:
| Q |
49 |
aacaccccctctaattttaaactaaacacaaacctccctta-atttttattcaaatctacaaacaccacccctatcatgtaacaccgttagttctctgtt |
147 |
Q |
| |
|
||||||||||||| |||| |||| ||||| ||||||||||| ||||||||||||| |||| |||| ||| | ||| |||||||||||| |||||||| |
|
|
| T |
18753830 |
aacaccccctctattttttaactcaacactaacctcccttatttttttattcaaatagacaaccacctcccttttcacttaacaccgttag-tctctgtt |
18753732 |
T |
|
| Q |
148 |
aa |
149 |
Q |
| |
|
|| |
|
|
| T |
18753731 |
aa |
18753730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 47955220 - 47955304
Alignment:
| Q |
4 |
gggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctt |
88 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||||||||||| | ||||||||||||| |||| || |||||| |||||||||| |
|
|
| T |
47955220 |
gggtaaattacactcacctcccttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctccctt |
47955304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 35899697 - 35899643
Alignment:
| Q |
49 |
aacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaat |
103 |
Q |
| |
|
||||||||||||| |||| |||| ||||| |||||||||||||| |||| ||||| |
|
|
| T |
35899697 |
aacaccccctctagtttttaactcaacactaacctcccttaattgttatacaaat |
35899643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 251 - 497
Target Start/End: Complemental strand, 32019600 - 32019355
Alignment:
| Q |
251 |
aaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatgcctaaacgtgataaatattcaattttaggatgaaggaa |
350 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||||| ||||||||||| |
|
|
| T |
32019600 |
aaaaaaggcttaatggaaagacctgagataaaaccttagcttttgaggcgagaagtttgatgtctatacgtaataaatat-caatttttggatgaaggaa |
32019502 |
T |
|
| Q |
351 |
gcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc-ttttggacaattagagaaggaagtggatggatagaaactgaaaatt |
449 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||||||||| ||||| |
|
|
| T |
32019501 |
gtgattttaattcacatcgacataataaagttggatgaattgcttaatgttgctttttgcggaattggagaaggaagtgaattgatagaaactg-aaatt |
32019403 |
T |
|
| Q |
450 |
ttaggttgaaaaattggataaaccaaattcaagaggatgaagaataat |
497 |
Q |
| |
|
| ||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
32019402 |
ctttgttgaaaaactagataaaccaaattgaagaggatgaagaataat |
32019355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 32019898 - 32019827
Alignment:
| Q |
84 |
cccttaatttttattcaaatctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagc |
155 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
32019898 |
cccttaatgtttattcaaatctacaaacgcctcccctattatataacaccgttagttctctgttaactaagc |
32019827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 25988956 - 25989044
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttatt |
98 |
Q |
| |
|
|||| ||| |||| || ||||||||||||||| || | ||||||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
25988956 |
attacacttacctaccatgaggttttcttaaacaaccctaacaccccctctagttttctactaaacacaaacctcccttaaattttatt |
25989044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 25989936 - 25989848
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttatt |
98 |
Q |
| |
|
|||| |||||||| |||| | |||||||||| || | |||||||||| || |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
25989936 |
attacactcacctcccttatgattttcttaaaaaacactaacaccccctttagttttcaactaaacacaaacctcccttaaattttatt |
25989848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 30854 - 30794
Alignment:
| Q |
29 |
aggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctta |
89 |
Q |
| |
|
|||||||||||||||| ||| ||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
30854 |
aggttttcttaaataacaaaaagaccccctttagttttaaactaaacactaacctccctta |
30794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 37767586 - 37767502
Alignment:
| Q |
5 |
ggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctta |
89 |
Q |
| |
|
|||| |||| ||| |||| || |||||| || |||||||| |||||| |||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
37767586 |
ggtaaattacactaacctcccctgaggtattgttaaataacacaaacatcccctctagtttttaactaaacataaacctccctta |
37767502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 32018194 - 32018269
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcc |
85 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||| | |||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
32018194 |
attacactcactttctttgaggtcttcttaaataacactaacattccctctaatttttaactaaacactaacctcc |
32018269 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 38002940 - 38003078
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaa |
109 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||| | |||| |||||||| |||| || ||||||| ||||||||||||||||||||||| | |||| |
|
|
| T |
38002940 |
attacactcacctccctttaggttttcttaaatagcactaacatcccctctagtttttaattaaacacttacctcccttaatttttattcaaagcgacaa |
38003039 |
T |
|
| Q |
110 |
acaccacccctatcatgtaacaccgttagttctctgtta |
148 |
Q |
| |
|
||||| || | | |||||||| |||||| |||||||| |
|
|
| T |
38003040 |
acacctccattgttatgtaacattgttagtgctctgtta |
38003078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 38003665 - 38003527
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaa |
109 |
Q |
| |
|
|||| |||||||| |||| |||| |||||||||| | |||| |||||||| |||| |||||||||| ||| ||| ||| ||||||||||| |||| |
|
|
| T |
38003665 |
attacactcacctcccttaaggtcttcttaaatagcactaacaacccctctactttttaactaaacactaacttcctataacttttattcaaagtgacaa |
38003566 |
T |
|
| Q |
110 |
acaccacccctatcatgtaacaccgttagttctctgtta |
148 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| |||||||| |
|
|
| T |
38003565 |
tcacctcccctatcatgtaacagcgtgagtgctctgtta |
38003527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 50900598 - 50900555
Alignment:
| Q |
47 |
caaacaccccctctaattttaaactaaacacaaacctcccttaa |
90 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
50900598 |
caaacaccccctctaattttaaaataaatactaacctcccttaa |
50900555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 19986936 - 19986894
Alignment:
| Q |
47 |
caaacaccccctctaattttaaactaaacacaaacctccctta |
89 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
19986936 |
caaacacctcctctagttttaaactaaatacaaacctccctta |
19986894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 20291158 - 20291198
Alignment:
| Q |
27 |
tgaggttttcttaaataatgcaaacaccccctctaatttta |
67 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
20291158 |
tgaggttttcttaaataacacaaacaccccctctagtttta |
20291198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11960095 - 11960194
Alignment:
| Q |
19 |
accttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacaccaccc |
118 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||| | ||||||||||| |
|
|
| T |
11960095 |
acctcccttgaggtttagttaaatagcacaaacaccccctctagttttaaactaaacacaaacctcccttattttgttatcaaattgaaaaacaccaccc |
11960194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 39985456 - 39985385
Alignment:
| Q |
48 |
aaacaccccctctaattttaaactaaacacaaacctcccttaatttttat-tcaaatctacaaacaccaccc |
118 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| |
|
|
| T |
39985456 |
aaacaccccctttagttttaaactaaacacaaacctcccttattttttttatcaaattgacaaacaccaccc |
39985385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 34597706 - 34597638
Alignment:
| Q |
27 |
tgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaattttt |
95 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||||||||||||| ||||||| | |||||| ||| |||| |
|
|
| T |
34597706 |
tgaggtctccttaaataacacaaacatcccctctaattttaaaataaacactagcctcccctaagtttt |
34597638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 9880574 - 9880654
Alignment:
| Q |
10 |
attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaa |
90 |
Q |
| |
|
|||| |||||||| ||||||| ||| |||||||| | |||||||||||| ||||||| || |||| |||||||||||| |
|
|
| T |
9880574 |
attacactcacctcccttgagttttctttaaataacaaagacaccccctctagttttaaaatagacaccaacctcccttaa |
9880654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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