View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_high_7 (Length: 463)

Name: NF19916_high_7
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_high_7
NF19916_high_7
[»] chr8 (4 HSPs)
chr8 (16-416)||(3062492-3062891)
chr8 (20-417)||(26082805-26083201)
chr8 (140-416)||(3058315-3058590)
chr8 (143-195)||(26065164-26065216)
[»] chr4 (3 HSPs)
chr4 (16-416)||(17439309-17439708)
chr4 (140-416)||(17443611-17443886)
chr4 (416-451)||(27496610-27496645)
[»] chr1 (3 HSPs)
chr1 (20-416)||(4877139-4877532)
chr1 (20-416)||(30189756-30190153)
chr1 (140-416)||(4872957-4873232)
[»] chr6 (1 HSPs)
chr6 (138-416)||(6667869-6668146)
[»] chr3 (3 HSPs)
chr3 (20-168)||(28013761-28013900)
chr3 (165-267)||(28010300-28010402)
chr3 (347-411)||(28010232-28010295)
[»] chr7 (1 HSPs)
chr7 (321-392)||(16174244-16174314)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 3062492 - 3062891
Alignment:
16 caaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3062492 caaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtg 3062591  T
116 tccatccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3062592 tccatccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagt 3062691  T
216 agttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
3062692 agttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgct 3062791  T
316 gttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||    
3062792 gttcactttttctgttttttctatatattgtatcagaaactttattttg-atgcagaatgaaattatcttcaagtttctgaaataacttttagttcttac 3062890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 26083201 - 26082805
Alignment:
20 cttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtgtcca 119  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26083201 cttattcatcgttgttccgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtgtcca 26083102  T
120 tccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagtt 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26083101 tccaaaatctcaaggaagagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagtt 26083002  T
220 gaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgttc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
26083001 gaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcttgctgttc 26082902  T
320 actttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttacac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||| |||||    
26082901 actttttctgttttttctatatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttttagttcatacac 26082805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 140 - 416
Target Start/End: Original strand, 3058315 - 3058590
Alignment:
140 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3058315 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 3058414  T
240 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgttcactttttctgttttttctat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
3058415 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgctgttcactttttctgttttttctat 3058514  T
340 atattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 416  Q
    ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
3058515 atattgtatcagaaactttattttg-atgcagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 3058590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 26065216 - 26065164
Alignment:
143 tgagacattgagatttcagatgtacacaatagtattttgtgatattttatgtt 195  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||||||    
26065216 tgagacattgagatttcagattaatacaatagtattttgtgatattttatgtt 26065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 17439708 - 17439309
Alignment:
16 caaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17439708 caaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtg 17439609  T
116 tccatccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17439608 tccatccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagt 17439509  T
216 agttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
17439508 agttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgct 17439409  T
316 gttcactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||    
17439408 gttcactttttctgttttttctatatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttttagttcttac 17439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 140 - 416
Target Start/End: Complemental strand, 17443886 - 17443611
Alignment:
140 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17443886 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17443787  T
240 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgttcactttttctgttttttctat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
17443786 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgctgttcactttttctgttttttctat 17443687  T
340 atattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 416  Q
    ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
17443686 atattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 17443611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 27496610 - 27496645
Alignment:
416 acaatcaaggacattgattaaacaataattaagttc 451  Q
    ||||||||||||||||||||||||||||||||||||    
27496610 acaatcaaggacattgattaaacaataattaagttc 27496645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 4877139 - 4877532
Alignment:
20 cttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtgtcca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4877139 cttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtgtcca 4877238  T
120 tccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagtt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
4877239 tccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtattttgtgatattt--tgttttcttttattttaatgtagtagtt 4877336  T
220 gaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgttc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
4877337 gaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgctgttc 4877436  T
320 actttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 416  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
4877437 actttttctgttttttctacatattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 4877532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 30189756 - 30190153
Alignment:
20 cttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtgtcca 119  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
30189756 cttattcactgttgttccgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagggtcca 30189855  T
120 tccaaaatctcaaggaggagtgttgagacattgagatttcagatgtacacaatagtatttt-gtgatattttatgttttcttttattttaatgtagtagt 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
30189856 tccaaaatctcaaggaggagtgttgagacattgagctttcagatgtacacaatagtatttttgtgatattttatgttttcttttattttaatgtagtagt 30189955  T
219 tgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgtt 318  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
30189956 tgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgctgtt 30190055  T
319 cactttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataac-ttttagttcttaca 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||| |||||| |||||||||||| || ||||||||||||||    
30190056 cactttttctgttttttctatatattgtatcagaaactttattttg-aagtagaataaaatcatcttccagtttctgaaattactttttagttcttaca 30190153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 140 - 416
Target Start/End: Original strand, 4872957 - 4873232
Alignment:
140 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
4872957 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 4873056  T
240 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgttcactttttctgttttttctat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
4873057 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgctgttcactttttctgttttttctaa 4873156  T
340 atattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 416  Q
    ||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||| |||||||||    
4873157 atattgtatcagaaactttattttg-atgtagaatgaaattatcttcaagtttctgaaataactttttgttcttaca 4873232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 138 - 416
Target Start/End: Complemental strand, 6668146 - 6667869
Alignment:
138 agtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
6668146 agtgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaa 6668047  T
238 gtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagacaactatgttgtcctgctgttcactttttctgttttttct 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
6668046 gtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcctgctgttcactttttctgttttttct 6667947  T
338 atatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttcttaca 416  Q
    ||||||||||||||||||||||||||| |   |||||||||||||||| |||||||| |||||||||||||||||||||    
6667946 atatattgtatcagaaactttattttg-atgtagaatgaaattatcttaaagtttcttaaataacttttagttcttaca 6667869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 28013900 - 28013761
Alignment:
20 cttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagctaagtttgaaaagtttcgagaattgcttggagtgtcca 119  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||         |||| |||||||||||||||||    
28013900 cttattcattgttgctcaaactctcaagtttctgatatattgactaaatctcttccaagagctaagttt---------cgaggattgcttggagtgtcca 28013810  T
120 tccaaaatctcaaggaggagtgttgagacattgagatttcagatgtaca 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
28013809 tccaaaatctcaaggaggagtgttgagacattgagatttcagatgtaca 28013761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 28010402 - 28010300
Alignment:
165 tacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtg 264  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||  ||||    
28010402 tacataatagtattttgtgatattttatgttatcttttgttttaatatagttgttgaagttacctctgcataagtatggtgacccatacttgttgaagtg 28010303  T
265 ttt 267  Q
    |||    
28010302 ttt 28010300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 28010295 - 28010232
Alignment:
347 atcagaaactttattttgaaaaaagaatgaaattatcttcaagtttctgaaataacttttagttc 411  Q
    ||||||||||| |||||||  || | |||||||||||||||||||||||||||  ||||||||||    
28010295 atcagaaacttcattttgatgaa-gtatgaaattatcttcaagtttctgaaatttcttttagttc 28010232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 392
Target Start/End: Original strand, 16174244 - 16174314
Alignment:
321 ctttttctgttttttctatatattgtatcagaaactttattttgaaaaaagaatgaaattatcttcaagttt 392  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||| ||  ||||||| |||||||| ||||||    
16174244 cttttcctgttttttctgtatattgtatcagaaacatcattttg-aagtagaatgatattatcttgaagttt 16174314  T

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