View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_high_9 (Length: 458)
Name: NF19916_high_9
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 23 - 445
Target Start/End: Original strand, 1261788 - 1262210
Alignment:
| Q |
23 |
gtgtatactcgacctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtcttg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1261788 |
gtgtatactcgacctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtcttg |
1261887 |
T |
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| Q |
123 |
tccaaatgctttgtgatgaagttagagaataaattttcttaatgagtctcaaaagttaataaatgcagggagaacttgagcataatcaaattgtggcagt |
222 |
Q |
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| T |
1261888 |
tccaaatgctttgtgatgaagttagagaataaattttcttaattagtctcaaaaattaataaatgcagggagaacttgagcataatcaaattgtggcagt |
1261987 |
T |
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| Q |
223 |
tattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaattattgaagctgtcaaagttgctggtaatattaag |
322 |
Q |
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| T |
1261988 |
tattaaacaagcagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaaaattattgaagctgtcaaagttgctggtaatattaag |
1262087 |
T |
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| Q |
323 |
gtaatgaatatttccaaattcatatatatctataaggaaagtgtttctcctaaaaatagatgaaattaccccccttctcttttgattttcttttcaatca |
422 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1262088 |
gtaatgaatatttccaaattcatatatatttataaggaaagtgtttctcctaaaaatagatgaaattaccccccttctcttttgattttcttttcaatca |
1262187 |
T |
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| Q |
423 |
ttgatcgataattattacttcct |
445 |
Q |
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|||| ||||||||||||||||| |
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| T |
1262188 |
ctgattgataattattacttcct |
1262210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 1338598 - 1338460
Alignment:
| Q |
186 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
285 |
Q |
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|||||||||||||||||||| | || |||||| ||| ||||| ||||||||||||||||||||||| ||| | || || |||||| ||||||||||||| |
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| T |
1338598 |
tgcagggagaacttgagcatgaccagattgtgaaagtgattaagcaagtagacattgtgatatgtacctttccatacccacaagtgttggagcaactcaa |
1338499 |
T |
|
| Q |
286 |
aattattgaagctgtcaaagttgctggtaatattaaggt |
324 |
Q |
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|||||| || ||| | ||||||||||| ||||| ||||| |
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| T |
1338498 |
aattatagatgctattaaagttgctggcaatatcaaggt |
1338460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 1338782 - 1338684
Alignment:
| Q |
23 |
gtgtatactcgacctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtctt |
121 |
Q |
| |
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|||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||| |
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| T |
1338782 |
gtgtatactcaccctattaattcaaaaactcctaactccaagatacaactttgcaaggaattcaattccattggagtaacacttgttgaggcaagtctt |
1338684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 1323859 - 1323720
Alignment:
| Q |
186 |
tgcagggagaacttgagcataatcaaattgtggcagttattaaacaagtagacattgtgatatgtacttttgcttatcctcaagtgatggagcaactcaa |
285 |
Q |
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|
|||||||||||||||| ||| | || ||||| ||| || ||| ||| |||||||||||||||||| ||| | ||||| |||||||||||||||||||| |
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| T |
1323859 |
tgcagggagaacttgaacatgaccagattgttagagtcataaaagaagcagacattgtgatatgtacctttccatatccgcaagtgatggagcaactcaa |
1323760 |
T |
|
| Q |
286 |
aattattgaagctgtcaaagttgctggtaatattaaggta |
325 |
Q |
| |
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|||| | || ||| ||||||||||||||||||| |||||| |
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| T |
1323759 |
aattgtagatgctatcaaagttgctggtaatatcaaggta |
1323720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 1324228 - 1324130
Alignment:
| Q |
23 |
gtgtatactcgacctattaattcacaaacacctacctccaagatacaactttgcaaggaattcagttccataggagtaacacttgtggaggtaagtctt |
121 |
Q |
| |
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||||||||||| || || ||||||||||| || |||| ||||||||||||||||| ||||||| |||||| |||| ||| |||||||||||||||||| |
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| T |
1324228 |
gtgtatactcgcccaatcaattcacaaacttctccctcaaagatacaactttgcaaagaattcaattccattggagcaactcttgtggaggtaagtctt |
1324130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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