View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_1 (Length: 700)
Name: NF19916_low_1
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 20 - 688
Target Start/End: Original strand, 31821571 - 31822240
Alignment:
| Q |
20 |
aatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatgcatgaagaatggaagaagtgattc |
119 |
Q |
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| T |
31821571 |
aatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatgcatgaagaatggaagaagtgattc |
31821670 |
T |
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| Q |
120 |
tttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaaaattctttacatttttcaaatttcttgttttagtttgat |
219 |
Q |
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| T |
31821671 |
tttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaaaattctttacatttttcaaatttcttgttttagtttgat |
31821770 |
T |
|
| Q |
220 |
agtgttgttaatgttgattacatctgtataaacttgttattaaggttcaaaccaagagttctacttgagaagcttagagggaagaggcttatgtttgttg |
319 |
Q |
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| T |
31821771 |
agtgttgttaatgttgattacatttgtataaacttgttattaaggttcaaaccaagagttctacttgagaagcttagagggaagaggcttatgtttgttg |
31821870 |
T |
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| Q |
320 |
gagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctc |
419 |
Q |
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| T |
31821871 |
gagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctc |
31821970 |
T |
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| Q |
420 |
tattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataat |
519 |
Q |
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| T |
31821971 |
tattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataat |
31822070 |
T |
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| Q |
520 |
tctagcctaataaaatgttcctcatgattaatgatgacacactaaggttaaaaaagaatgaaaatacaaaacctgatcagtgttgctattagaccacaat |
619 |
Q |
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| T |
31822071 |
tctagcctaataaaatgttcctcatgattaatgatgacacactaaggttaaaaaagaatgaaaatacaaaacctgatcagtgttgctattagaccacaat |
31822170 |
T |
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| Q |
620 |
tgatggactaattgatgattattt-atgtttgtttgatctataaatcacttttgaaaaaccgaacttcat |
688 |
Q |
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| T |
31822171 |
tgatggactgattgatgattatttcatgtttgtttgatctataaagcccttttgaaaaaccgaacttcat |
31822240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 35688477 - 35688616
Alignment:
| Q |
20 |
aatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatgcatgaagaatggaagaagtgattc |
119 |
Q |
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| T |
35688477 |
aatgggttttagataacgtgacacatcctttgtataaagaagatgaatgtgagtttctcacttctcaagttacatgtatgaggaatggaagacgtgattc |
35688576 |
T |
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| Q |
120 |
tttgtatcagaattggaggtggcagccaagagattgttct |
159 |
Q |
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| T |
35688577 |
tttgtatcagaattggaaatggcagccaaaagactgttct |
35688616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 35688742 - 35688829
Alignment:
| Q |
287 |
agaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgt |
374 |
Q |
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| T |
35688742 |
agaagattagagggaagaggttaatgtttgttggagactctttgaatagaaaccagtgggaatcaatggtttgtatggttcaatctgt |
35688829 |
T |
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