View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_12 (Length: 447)
Name: NF19916_low_12
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 24146911 - 24147331
Alignment:
| Q |
19 |
aaacagttcaatcggtggaaccttgaactggactttattacggttcggttattatggtggttgtatcccagattcaacctagttctagcagttgaaggtg |
118 |
Q |
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| T |
24146911 |
aaacagttcaatcggtggaaccttgaactggactttattaccgttcggttattatggtggttgtatcccagattcaacctagttctagcagtttaaggtg |
24147010 |
T |
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| Q |
119 |
gttgaatcatgacctagaggtctcgcctgttcagtttttgaaacattgactaaaatatcttagcttacagagctaacaatggctggttgtgaagcagggt |
218 |
Q |
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| T |
24147011 |
gttgaatcatgacctagaggtctcgcctgttcagtttttgaaacattgactaaaatatcttagcttacagagctaacaatggctggttgtgaagcagggt |
24147110 |
T |
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| Q |
219 |
cttggacttgctatcggtgctgtgcttatggactcgaaaagagcaacaactttgggttccgtaaccgtgatgatcttcatgctggctggaggattttttg |
318 |
Q |
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| T |
24147111 |
cttggacttgctatcggtgctgtgcttatggactcgaaaagtgcaacaactttgggttccgtaaccgtgatgatcttcatgctggctggaggattttttg |
24147210 |
T |
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| Q |
319 |
tccaggtgaaaacacatacctaaattaatgatcaaatagttgacatggataacttttccagtctactaacagaagaatttaacgt---gtccttaatttt |
415 |
Q |
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| T |
24147211 |
tccaggtgaaaacacatacctaaattaatgatcaaatagttgacatggataacttttccagtctactaacagaagaatttaacatgtggtacttaatttt |
24147310 |
T |
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| Q |
416 |
gcagaaagtcccaatattcat |
436 |
Q |
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| T |
24147311 |
gcagaaagtcccaatattcat |
24147331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 105 - 356
Target Start/End: Original strand, 24129038 - 24129287
Alignment:
| Q |
105 |
agcagttgaaggtggttgaatcatgacctagaggtctcgcctgttcagtttttgaaacattgactaaaatatcttagcttacagagctaacaatggctgg |
204 |
Q |
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| T |
24129038 |
agcagtttaaggcagttgaaccacgacctaaaggtctcgcatgttcggtttttataatattggctaaaatagct-agcttacggtgctaacaatggctga |
24129136 |
T |
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| Q |
205 |
ttgtgaagcagggtcttggacttgctatcggtgctgtgcttatggactcgaaaagagcaacaactttgggttccgtaaccgtgatgatcttcatgctggc |
304 |
Q |
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| T |
24129137 |
ttgcgaagcagggtcttggacttgctatcggtgctacgcttatggacttgaaaagagcaacaactttggcttcggtaacggtgatgaccttcatgctggc |
24129236 |
T |
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| Q |
305 |
tggaggattttttgtccaggtgaaaacacatacctaaattaatgatcaaata |
356 |
Q |
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| T |
24129237 |
tggaggatttttcgtccaggt-aaaacacataccaaaatttacgatcaaata |
24129287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 24129295 - 24129350
Alignment:
| Q |
384 |
ctaacagaagaatttaacgt---gtccttaattttgcagaaagtcccaatattcat |
436 |
Q |
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| T |
24129295 |
ctaacagaagaatttaacgtatggtccttaattttgcagaaagtcccaatattcat |
24129350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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