View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_13 (Length: 431)

Name: NF19916_low_13
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_13
NF19916_low_13
[»] chr5 (6 HSPs)
chr5 (36-431)||(18964707-18965105)
chr5 (235-316)||(29597544-29597625)
chr5 (235-316)||(29642356-29642437)
chr5 (235-316)||(29647673-29647754)
chr5 (238-318)||(24330889-24330969)
chr5 (240-289)||(23086784-23086833)
[»] chr6 (14 HSPs)
chr6 (32-325)||(20770444-20770737)
chr6 (249-431)||(17369675-17369854)
chr6 (90-318)||(6921340-6921568)
chr6 (94-318)||(6947870-6948094)
chr6 (57-308)||(6935218-6935469)
chr6 (237-302)||(6954525-6954590)
chr6 (238-302)||(6942973-6943037)
chr6 (29-164)||(6943098-6943233)
chr6 (235-292)||(24254442-24254499)
chr6 (240-287)||(19746715-19746762)
chr6 (91-164)||(6954663-6954736)
chr6 (237-302)||(14749396-14749461)
chr6 (238-302)||(24950150-24950214)
chr6 (240-272)||(34861907-34861939)
[»] chr4 (18 HSPs)
chr4 (30-317)||(53774644-53774919)
chr4 (200-325)||(11970965-11971090)
chr4 (200-320)||(11981671-11981791)
chr4 (238-319)||(3557726-3557807)
chr4 (238-319)||(3565744-3565825)
chr4 (238-325)||(3560941-3561028)
chr4 (235-325)||(53790550-53790640)
chr4 (244-323)||(1686270-1686349)
chr4 (195-314)||(8443448-8443567)
chr4 (235-302)||(35767015-35767082)
chr4 (195-314)||(10482138-10482257)
chr4 (261-319)||(19359160-19359218)
chr4 (237-302)||(837775-837840)
chr4 (238-326)||(53430081-53430169)
chr4 (238-272)||(10468042-10468076)
chr4 (195-270)||(10475164-10475239)
chr4 (246-307)||(6392832-6392893)
chr4 (195-268)||(6388197-6388270)
[»] chr7 (61 HSPs)
chr7 (235-407)||(14076675-14076834)
chr7 (235-407)||(14386703-14386862)
chr7 (29-318)||(1985945-1986234)
chr7 (235-318)||(19344565-19344648)
chr7 (191-307)||(19604464-19604580)
chr7 (239-325)||(660830-660916)
chr7 (18-161)||(14076475-14076618)
chr7 (18-161)||(14386503-14386646)
chr7 (235-320)||(20352092-20352177)
chr7 (200-325)||(22080830-22080955)
chr7 (244-320)||(29874517-29874593)
chr7 (235-314)||(22063639-22063718)
chr7 (238-320)||(29859454-29859536)
chr7 (208-314)||(22100463-22100569)
chr7 (240-320)||(6864795-6864875)
chr7 (244-320)||(18514775-18514851)
chr7 (236-320)||(20058045-20058129)
chr7 (200-325)||(22070073-22070198)
chr7 (238-326)||(29454085-29454173)
chr7 (238-301)||(29445663-29445726)
chr7 (238-320)||(29867236-29867318)
chr7 (238-319)||(12819905-12819986)
chr7 (235-320)||(20374491-20374576)
chr7 (184-301)||(22021338-22021455)
chr7 (238-318)||(29921983-29922063)
chr7 (235-290)||(20338921-20338976)
chr7 (240-319)||(24002201-24002280)
chr7 (185-308)||(15571895-15572018)
chr7 (237-319)||(19351058-19351140)
chr7 (238-320)||(29476328-29476410)
chr7 (183-309)||(13416910-13417036)
chr7 (237-298)||(22028627-22028688)
chr7 (238-307)||(29106814-29106883)
chr7 (238-302)||(29899374-29899438)
chr7 (238-318)||(36260253-36260333)
chr7 (238-285)||(9807824-9807871)
chr7 (182-302)||(19597661-19597781)
chr7 (240-319)||(24010385-24010464)
chr7 (238-325)||(29430984-29431071)
chr7 (249-320)||(29881267-29881338)
chr7 (78-160)||(13417071-13417153)
chr7 (240-318)||(15443966-15444044)
chr7 (235-325)||(19325968-19326058)
chr7 (247-320)||(20133305-20133378)
chr7 (247-320)||(20140806-20140879)
chr7 (235-320)||(22520252-22520337)
chr7 (210-307)||(18952906-18953003)
chr7 (210-307)||(18982953-18983050)
chr7 (210-307)||(18997599-18997696)
chr7 (238-290)||(36263053-36263105)
chr7 (237-320)||(19357909-19357992)
chr7 (238-277)||(19637248-19637287)
chr7 (246-317)||(19645621-19645692)
chr7 (238-301)||(19722018-19722081)
chr7 (245-320)||(24385208-24385283)
chr7 (260-302)||(19374778-19374820)
chr7 (238-292)||(21218724-21218778)
chr7 (238-292)||(26256775-26256829)
chr7 (184-221)||(22037032-22037069)
chr7 (243-320)||(36255371-36255448)
chr7 (238-322)||(22473144-22473228)
[»] chr3 (3 HSPs)
chr3 (244-325)||(3625740-3625821)
chr3 (237-314)||(25901273-25901350)
chr3 (237-314)||(25915291-25915368)
[»] chr1 (9 HSPs)
chr1 (238-322)||(39379047-39379131)
chr1 (238-308)||(4570927-4570997)
chr1 (238-325)||(4366478-4366565)
chr1 (238-307)||(10218985-10219054)
chr1 (235-308)||(50645485-50645558)
chr1 (238-318)||(21855373-21855453)
chr1 (241-299)||(4014974-4015032)
chr1 (243-292)||(15961233-15961282)
chr1 (238-308)||(17560773-17560843)
[»] chr2 (11 HSPs)
chr2 (241-325)||(14514903-14514987)
chr2 (190-319)||(18920754-18920883)
chr2 (190-319)||(18908798-18908927)
chr2 (236-292)||(20975556-20975612)
chr2 (237-319)||(18913546-18913628)
chr2 (238-292)||(25698507-25698561)
chr2 (185-308)||(554423-554546)
chr2 (237-309)||(25377073-25377145)
chr2 (266-320)||(22051737-22051791)
chr2 (238-287)||(20967700-20967749)
chr2 (238-287)||(20980604-20980653)
[»] chr8 (5 HSPs)
chr8 (208-320)||(27618461-27618573)
chr8 (240-292)||(29390288-29390340)
chr8 (235-292)||(11339435-11339492)
chr8 (235-292)||(11345117-11345174)
chr8 (240-292)||(11338592-11338644)
[»] scaffold0867 (1 HSPs)
scaffold0867 (208-314)||(4663-4769)
[»] scaffold0354 (1 HSPs)
scaffold0354 (246-322)||(7471-7547)
[»] scaffold0242 (2 HSPs)
scaffold0242 (238-320)||(13718-13800)
scaffold0242 (238-320)||(22553-22635)
[»] scaffold0649 (1 HSPs)
scaffold0649 (238-287)||(5438-5487)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 36 - 431
Target Start/End: Complemental strand, 18965105 - 18964707
Alignment:
Q  36 agttggttgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacac 135  Q
    ||||||||| || |||| ||||||||||||||||| || | | || | || |||||||||||||||||||  |||||| ||| |   |||||||  ||||    
T  18965105 agttggttggtccgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacac 18965006  T
Q  136 agttgttactccctcaatgttgtgatgaatttccac---ttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnn 232  Q
    ||||||||||||||| |||||||||||| || | ||   |||||| ||  || |||||||| |||||| ||||  |||||||| |||||||| ||         
T  18965005 agttgttactccctccatgttgtgatgagttgcaaccgcttgatactccgaccctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaa 18964906  T
Q  233 nnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattagacgactat 332  Q
      |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18964905 aactcatttcattatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaaatagacgactat 18964806  T
Q  333 agactcgatgttgttcctcaagtgtttccactgtgtctctccgaaaatggttatacattgatactggcaatcaatcattccgtattcaatataagagac 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18964805 agactcgatgttgttcctcaagtgtttccactgtgtctctccgaaaatggttatacattgatactggcaatcaatcattccgtattcaatataagagac 18964707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 29597625 - 29597544
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatct 316  Q
    ||||||||||||||||||||||||  ||||||||||||||| | |||||||||||||| ||||||||| ||| ||| |||||    
T  29597625 ctcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttcaaaatct 29597544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 29642356 - 29642437
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatct 316  Q
    ||||||| ||||||||||||||||  ||||||||| ||||| | |||||||||||||| ||||||||| ||| |||||||||    
T  29642356 ctcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcagaatct 29642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 29647673 - 29647754
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatct 316  Q
    ||||||||||||||||||||||||  ||||||||| ||||| | |||||||||||||| ||||||||| ||| ||| |||||    
T  29647673 ctcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttcaaaatct 29647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 24330969 - 24330889
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
    |||||||||||||| | |||||||||||||| |||||||| |||||||||||| | |||||| || |||| || |||||||    
T  24330969 attttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagttaccataatcttc 24330889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 23086784 - 23086833
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactca 289  Q
    |||||||||||||| |||||||| ||||||||| |||| |||||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggactca 23086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 32 - 325
Target Start/End: Original strand, 20770444 - 20770737
Alignment:
Q  32 tattagttggttgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatac 131  Q
    |||| |||||||| ||||||| ||||||||||||| |||||||||| ||| |||| ||||||||||||| ||||  ||||||||||||  ||||||||||    
T  20770444 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatac 20770543  T
Q  132 acacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnn 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||        
T  20770544 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatcaaactctttgtgtgttgatggattgtatttgtttttctcatgatgttaaaa 20770643  T
Q  232 nnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
       || |||||||||||||||||||||||||||||||| ||||||| || |||| |||||| ||||||||| ||||||| ||||||||| ||||    
T  20770644 aaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaataga 20770737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 249 - 431
Target Start/End: Original strand, 17369675 - 17369854
Alignment:
Q  249 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattagacgactatagactcgatgttgttc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||   |  |||||||| |||| ||||     
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaata---gcttatagacttgatgatgttt 17369771  T
Q  349 ctcaagtgtttccactgtgtctctccgaaaatggttatacattgatactggcaatcaatcattccgtattcaatataagagac 431  Q
     ||||||||||||| ||||||| ||||||||||||  |||||||||| ||| ||||||| | || ||||| |||||| |||||    
T  17369772 ttcaagtgtttccattgtgtctatccgaaaatggtggtacattgatattggtaatcaataactcggtattaaatataggagac 17369854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 90 - 318
Target Start/End: Complemental strand, 6921568 - 6921340
Alignment:
Q  90 caatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactcttt 189  Q
    ||||||||||| ||||  |||||||||| | |||||||||| ||||| ||||| ||||||| |||||||||||||   | || | ||  || ||||||||    
T  6921568 caatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctacataatgttccaactcttt 6921469  T
Q  190 gtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactca 289  Q
     ||| |||||||||||  | | ||||||| |||||| |       | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  6921468 ctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactca 6921369  T
Q  290 atttcttaaaatttgttatcagaatcttc 318  Q
    ||| ||||||||| |||||  ||||||||    
T  6921368 attccttaaaattagttatacgaatcttc 6921340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 94 - 318
Target Start/End: Complemental strand, 6948094 - 6947870
Alignment:
Q  94 ttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactctttgtgt 193  Q
    ||||||| ||||  |||||||||| | |||||| ||| |||| |||||| ||||||| |||||||||||||   | || ||||  || |||||||| |||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgt 6947995  T
Q  194 gttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaattt 293  Q
    ||||||||||||  |||||||||| ||||||||        | || |||||| | ||||||||||||||||||||||||||||| ||||||||||||||     
T  6947994 gttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattc 6947895  T
Q  294 cttaaaatttgttatcagaatcttc 318  Q
    ||||||||| |||||  ||||||||    
T  6947894 cttaaaattagttatgtgaatcttc 6947870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 6935469 - 6935218
Alignment:
Q  57 tataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgtt 156  Q
    ||||||||||||  ||| ||| ||||| |||| ||||| ||||| ||||  |||||||||| | |||||||||  ||| | ||||| ||||||| |||||    
T  6935469 tataattgtcatttgaagaatcttacagtcgaacaattcgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgtt 6935370  T
Q  157 gtgatgaatttccacttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaat 256  Q
    ||||||||   | || ||    ||  ||||||| ||  |||||||||||  | | ||||||| ||||||||       | |||| |||||| ||||||||    
T  6935369 gtgatgaagagctacatggctttcctactctttctggattgatggattgcctctatttttcttatgattttaagaaaacccattatgttatttggcaaat 6935270  T
Q  257 gaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttat 308  Q
    |||||||||||||||| |||| ||||||||| |||| ||||||||| |||||    
T  6935269 gaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 6935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 6954590 - 6954525
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  6954590 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaatt 6954525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 6943037 - 6942973
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    |||||||||| | ||||||||||||||||||||||||||| |||| ||| ||||| |||||||||    
T  6943037 attttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattccttaaaatt 6942973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 6943233 - 6943098
Alignment:
Q  29 tagtattagttggt-tgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagac 127  Q
    |||||||||||||| || || |||| || ||||||||||||  ||| ||| ||||| | || ||||| ||||| ||||  |||||||||| | |||||||    
T  6943233 tagtattagttggtgtgttc-gtcaccgatataattgtcatttgaagaatcttacagttgaacaattcgtgatgatctcacttgatttggggacagagac 6943135  T
Q  128 atacacacagttgttactccctcaatgttgtgatgaa 164  Q
    ||| ||| | ||||| |||||||||||||||||||||    
T  6943134 atatacaaaattgttgctccctcaatgttgtgatgaa 6943098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 24254499 - 24254442
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    ||||||||||||||||||| |||  |||||||||||| ||| | ||||||||||||||    
T  24254499 ctcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactcaatt 24254442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 19746762 - 19746715
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggact 287  Q
    ||||||||||||||||||||| | ||||||||| |||| |||||||||    
T  19746762 tttgttatatggcaaatgaagaagtttggagttcaagagtcttggact 19746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 6954736 - 6954663
Alignment:
Q  91 aatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtgatgaa 164  Q
    |||||||||| ||||  |||||| ||  | |||||||||| ||||||||||| ||||| | |||||||||||||    
T  6954736 aatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaa 6954663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 14749396 - 14749461
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    ||||||||| |||||   |||| ||||||||||||| |||| |||||||||||||| || ||||||    
T  14749396 cattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaatt 14749461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 24950214 - 24950150
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    |||||||||||||| | |||| | | ||||||||||| || ||||||| |||||| |||||||||    
T  24950214 attttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaatt 24950150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 34861939 - 34861907
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagtt 272  Q
    ||||||||||||||||||||||| |||||||||    
T  34861939 tttgttatatggcaaatgaaggagtttggagtt 34861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 30 - 317
Target Start/End: Original strand, 53774644 - 53774919
Alignment:
Q  30 agtattagttggttgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacat 129  Q
    |||||||| |||||| | || || |||||||| ||||| ||||| ||| |||||| ||| |||||||||||||| | ||||||||||| | |||||||||    
T  53774644 agtattagctggttggtttgccaccgttataaatgtcaacagaagaatcttacaaccgaacaatttgtgattatttcgcttgatttggagacagagacat 53774743  T
Q  130 acacacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgattttnn 229  Q
    | |||||||||  ||||||| |||            | ||| ||||||||| || | |||||| ||||||||||||||||||||||||| ||||||||      
T  53774744 atacacagttgcaactccctaaat------------tgccatttgataatccaaatatttgtgcgttgatggattgtatttgtttttcttatgattttaa 53774831  T
Q  230 nnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatctt 317  Q
         ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  53774832 agaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 11971090 - 11970965
Alignment:
Q  200 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaa 299  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |    
T  11971090 ggattgtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttaga 11970991  T
Q  300 atttgttatcagaatcttcaattaga 325  Q
    ||| ||||||| ||||||||| ||||    
T  11970990 attagttatcataatcttcaaataga 11970965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 200 - 320
Target Start/End: Complemental strand, 11981791 - 11981671
Alignment:
Q  200 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaa 299  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||    
T  11981791 ggattgtctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaa 11981692  T
Q  300 atttgttatcagaatcttcaa 320  Q
    ||| ||||||  |||||||||    
T  11981691 attagttatcttaatcttcaa 11981671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 3557726 - 3557807
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    ||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||||||    
T  3557726 attttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 3565744 - 3565825
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    ||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||  |||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 3561028 - 3560941
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    ||||| |||| ||||| |||||  ||||||| |||||||| |||||||||||||||||||||||| |||||||  |||||||||||||    
T  3561028 attttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcatgatcttcaattaga 3560941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 53790550 - 53790640
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    |||||||| |||||||| | ||||   |||||||| ||||| | |||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  53790550 ctcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttcagaatcttcaagtaga 53790640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 1686349 - 1686270
Alignment:
Q  244 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaatta 323  Q
    |||||||||| |||||||||||||| ||||| || |||||||||||||||||||||  | ||||| |  |||||||||||    
T  1686349 ttatatggcagatgaaggaatttggcgttgacgagtcttggactcaatttcttaaatatagttattatgatcttcaatta 1686270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 8443567 - 8443448
Alignment:
Q  195 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttc 294  Q
    |||||||| ||| ||||||||||| |||||||        |||||| |||||| ||||| |||||||| ||||||||| | || ||||||| ||||||      
T  8443567 ttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattat 8443468  T
Q  295 ttaaaatttgttatcagaat 314  Q
    |||||||| |||||||||||    
T  8443467 ttaaaattagttatcagaat 8443448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 35767015 - 35767082
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    ||||||||||||||||| | ||| | ||||||||||||||||| ||||||| |||| | |||||||||    
T  35767015 ctcattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaactccttaaaatt 35767082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 10482138 - 10482257
Alignment:
Q  195 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttc 294  Q
    |||||||||||| ||||||||  |||||||| |       || ||||||||||||||||||||||||| ||||||||| |    ||||||| ||||||      
T  10482138 ttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattat 10482237  T
Q  295 ttaaaatttgttatcagaat 314  Q
    ||||||||  ||||||||||    
T  10482238 ttaaaattacttatcagaat 10482257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 19359160 - 19359218
Alignment:
Q  261 gaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    ||||||||||||||||| |||||||||||| || |||||||| | ||||| ||||||||    
T  19359160 gaatttggagttgaagagtcttggactcaacttattaaaattaggtatcaaaatcttca 19359218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 837775 - 837840
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    |||||||||||||||||||||||| | ||||| ||| |||| ||||||| ||||||  ||||||||    
T  837775 cattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaatt 837840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 53430169 - 53430081
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattagac 326  Q
    ||||||| |||||||| |||||| ||| ||| |  ||||| |||||||||||||| ||||||||| |||| ||  |||||||| |||||    
T  53430169 attttgtcatatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagttaccaacatcttcaagtagac 53430081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 10468042 - 10468076
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagtt 272  Q
    ||||||||||||||||||||||||| |||||||||    
T  10468042 attttgttatatggcaaatgaaggattttggagtt 10468076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
Q  195 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggag 270  Q
    |||||||||||| ||||||||| | |||||||        | |||||||||||||||||||||||||| |||||||    
T  10475164 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 6392832 - 6392893
Alignment:
Q  246 atatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    ||||||||||||||||| ||||||||| | || ||||||| ||||||  |||||||| ||||    
T  6392832 atatggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 6388197 - 6388270
Alignment:
Q  195 ttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttgg 268  Q
    |||||||  ||| ||||||||| ||||||||||       |||||| ||||||||||||||||||||| |||||    
T  6388197 ttgatgggctgtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaaatgaaggattttgg 6388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 61)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 235 - 407
Target Start/End: Original strand, 14076675 - 14076834
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattagacgactatag 334  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||             
T  14076675 ctcatttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga--------- 14076765  T
Q  335 actcgatgttgttcctcaagtgtttccactgtgtctctccgaaaatggttatacattgatactggcaatcaat 407  Q
        |||||||||||||||||||||||| ||||||||||||| || |||  |||||||||| ||| |||||||    
T  14076766 ----gatgttgttcctcaagtgtttccattgtgtctctccgagaaaggtggtacattgatattgggaatcaat 14076834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 235 - 407
Target Start/End: Original strand, 14386703 - 14386862
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattagacgactatag 334  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||             
T  14386703 ctcatttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga--------- 14386793  T
Q  335 actcgatgttgttcctcaagtgtttccactgtgtctctccgaaaatggttatacattgatactggcaatcaat 407  Q
        |||||||||||||||||||||||| ||||||||||||| || |||  |||||||||| ||| |||||||    
T  14386794 ----gatgttgttcctcaagtgtttccattgtgtctctccgagaaaggtggtacattgatattgggaatcaat 14386862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 318
Target Start/End: Complemental strand, 1986234 - 1985945
Alignment:
Q  29 tagtattagttggt-tgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttggcgtcagagac 127  Q
    |||||||||||||| || || |||| || ||||||||||||  ||| ||| ||||| | || ||| |||| |||||||  |||||||||| | ||||||     
T  1986234 tagtattagttggtgtgttc-gtcaccgatataattgtcatttgaagaatcttacagttgaacaacttgtaattatctcacttgatttggggacagagag 1986136  T
Q  128 atacacacagttgttactccctcaatgttgtgatgaatttccacttgataatcgaactctttgtgtgttgatggattgtatttgtttttctcatgatttt 227  Q
    ||| ||||||||||| ||||||| || ||||||||||  || || || |  || |||||||| |||||||||||||||  | | ||||||| |||||||     
T  1986135 atatacacagttgttgctccctcgatattgtgatgaagatctacatggtgttccaactctttctgtgttgatggattgcctctatttttcttatgatttc 1986036  T
Q  228 nnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
           | ||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||  |||||||| |||||  ||||||||    
T  1986035 aagaaaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttatatgaatcttc 1985945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 19344648 - 19344565
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
    ||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||    
T  19344648 ctcattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 19344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 307
Target Start/End: Complemental strand, 19604580 - 19604464
Alignment:
Q  191 tgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaa 290  Q
    |||||||||||| |  |||||||||||||||||||||       |||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  19604580 tgtgttgatggactccatttgtttttctcatgattttcataaaactcactttattatatggcagatgaaggaatttggagttgaagactcctggactcaa 19604481  T
Q  291 tttcttaaaatttgtta 307  Q
    || ||||||||| ||||    
T  19604480 ttccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 660916 - 660830
Alignment:
Q  239 ttttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    ||||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||| ||||||||| ||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaataga 660830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 14076475 - 14076618
Alignment:
Q  18 tatttaagcaatagtattagttggttgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttgg 117  Q
    ||||| || |||||| | ||||||||| || |||| |||||||  ||||||  ||||||| | || || |||||||||||||||||||  ||||||||||    
T  14076475 tatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttgatttgg 14076574  T
Q  118 cgtcagagacatacacacagttgttactccctcaatgttgtgat 161  Q
     | | |||||||| ||||| ||||||||||||| ||||||||||    
T  14076575 ggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 14386503 - 14386646
Alignment:
Q  18 tatttaagcaatagtattagttggttgatctgtcaacgttataattgtcatcagaataatattacaatcgagcaatttgtgattatctagcttgatttgg 117  Q
    ||||| || |||||| | ||||||||| || |||| |||||||  ||||||  ||||||| | || || |||||||||||||||||||  ||||||||||    
T  14386503 tatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttgatttgg 14386602  T
Q  118 cgtcagagacatacacacagttgttactccctcaatgttgtgat 161  Q
     | | |||||||| ||||| ||||||||||||| ||||||||||    
T  14386603 ggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 20352092 - 20352177
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    |||||||||| |||||| ||||||||||||||||||||||||| || ||||||||| || |||||||| ||||| | |||||||||    
T  20352092 ctcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagttatgataatcttcaa 20352177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 22080830 - 22080955
Alignment:
Q  200 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaa 299  Q
    ||||||| |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||  ||  | |||    
T  22080830 ggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaa 22080929  T
Q  300 atttgttatcagaatcttcaattaga 325  Q
    ||| ||||||||||||| ||| ||||    
T  22080930 attagttatcagaatctccaaataga 22080955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 29874517 - 29874593
Alignment:
Q  244 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||| ||| ||||||||| ||||||| |||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttatcaaaatcttcaa 29874593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 22063639 - 22063718
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaat 314  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||  | |||||| |||||||||||    
T  22063639 ctcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttatcagaat 22063718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 29859454 - 29859536
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    |||| ||||||||| | |||||| |||||||||||||||| |||||||| | ||||||||||||| ||||||| |||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 22100463 - 22100569
Alignment:
Q  208 tttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||| ||  | |||||| ||||    
T  22100463 tttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtta 22100562  T
Q  308 tcagaat 314  Q
    |||||||    
T  22100563 tcagaat 22100569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 6864875 - 6864795
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||| ||||||  |||||||||||||||||||||||| ||||||||||| || ||||||| | ||||||| |||||||||    
T  6864875 tttgtaatatggttaatgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttcaa 6864795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 18514851 - 18514775
Alignment:
Q  244 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    |||||||| ||||| | ||||||||||||||| |||||||||||||||| ||||||||| |||||  ||||||||||    
T  18514851 ttatatggaaaatggacgaatttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttcaa 18514775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 20058129 - 20058045
Alignment:
Q  236 tcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    |||||||||||||||| ||||| |||||||  |||||||||| ||||||  |||||||||||||||| ||||| | |||||||||    
T  20058129 tcattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttatgaaaatcttcaa 20058045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 22070073 - 22070198
Alignment:
Q  200 ggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaa 299  Q
    ||||||| |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||  ||  | |||    
T  22070073 ggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaa 22070172  T
Q  300 atttgttatcagaatcttcaattaga 325  Q
    ||| ||||| ||||||| ||| ||||    
T  22070173 attagttataagaatctccaaataga 22070198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 29454173 - 29454085
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattagac 326  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||||||||||||  |||||||| |||||||  |||||||| |||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttcaaatagac 29454085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 29445726 - 29445663
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaat 301  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  29445726 attttcttatatggcagatgaaggaattaggggttgaagactcttggactcaatttctaaaaat 29445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 29867236 - 29867318
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||| ||||||||||||||||| |||| || |||||||| |||||||||||||| |||| |||| |||| || |||||||||    
T  29867236 attttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagttaccataatcttcaa 29867318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 12819986 - 12819905
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    |||||||| ||||||| |||| |||||||||||||||| | || ||||||||||| ||||||||  ||| ||||||||||||    
T  12819986 attttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagttgtcagaatcttca 12819905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 20374576 - 20374491
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    |||||||||| |||||| ||||||||||||||||||||| ||| || |||| |||| || |||||||| ||||| | |||||||||    
T  20374576 ctcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagttataataatcttcaa 20374491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 22021338 - 22021455
Alignment:
Q  184 ctctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttg 283  Q
    |||| ||||||||||||||||| |||||||||||||||  | |        | ||||| ||||||||||| |||| ||| | |||||||||||| |||||    
T  22021338 ctctatgtgtgttgatggattgcatttgtttttctcatcttgtgaagaaaacccatttggttatatggcagatgatggattatggagttgaagaatcttg 22021437  T
Q  284 gactcaatttcttaaaat 301  Q
    ||||||||| ||||||||    
T  22021438 gactcaattacttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 29922063 - 29921983
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
    |||||||||||||||| |||||| ||||||| | |||||| |||||| ||||||| |||| |||| ||||||| |||||||    
T  29922063 attttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaattccttagaattagttatcaaaatcttc 29921983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 20338921 - 20338976
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaa 290  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||    
T  20338921 ctcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaa 20338976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 24002201 - 24002280
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    |||||| ||||||| |||||||| |  |||||| |||| |||||||||||||| ||||| ||| ||||||||||||||||    
T  24002201 tttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24002280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 15572018 - 15571895
Alignment:
Q  185 tctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttgg 284  Q
    ||||| |||||| ||||||||| ||||||||||| |||||||        | |||||||| || |||||||||| ||| |||||||||||||| ||||||    
T  15572018 tctttctgtgtttatggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T
Q  285 actcaatttcttaaaatttgttat 308  Q
      |||||| | ||||||| |||||    
T  15571918 gttcaattccataaaattagttat 15571895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 19351140 - 19351058
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    ||||||||| ||||||| |||| ||||||||||||||| || |||||||||| ||| || |||||| ||| |||| |||||||    
T  19351140 cattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttca 19351058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 29476410 - 29476328
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||| |||||||||| ||||||||||| ||   |||  |||||||||||||||||||||||||  ||||||| |||||||||    
T  29476410 attttcttatatggcagatgaaggaattagggaatgacaactcttggactcaatttcttaaaataagttatcaaaatcttcaa 29476328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 13417036 - 13416910
Alignment:
Q  183 actctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactctt 282  Q
    ||||||| | ||||||  |||||| ||||||||||| ||||||||       |  ||||| | |||||||||||||||||||||||||||||||| ||||    
T  13417036 actctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagagtctt 13416937  T
Q  283 ggactcaatttcttaaaatttgttatc 309  Q
    ||  | ||||  |||||||| ||||||    
T  13416936 gggttgaattcgttaaaattagttatc 13416910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 22028627 - 22028688
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaa 298  Q
    ||||||||||||||| |||||| ||| | |||||||||||| |||||||||||||| |||||    
T  22028627 cattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaa 22028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 29106814 - 29106883
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    |||||||| ||||||| |||||| ||||||| |||||||| |||||||||||| || |||||||| ||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagtta 29106883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 29899374 - 29899438
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    |||||||||||||||| |||||| ||||||| |||||||| || |||||||||||| | ||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaatt 29899438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 36260253 - 36260333
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
    |||||||||||||| | ||| | ||||||||||||||||| ||||||| |||| || |||||||| | ||||| |||||||    
T  36260253 attttgttatatggaagatggaagaatttggagttgaagagtcttggattcaacttattaaaattagctatcaaaatcttc 36260333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 9807824 - 9807871
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttgga 285  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  9807824 atttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 19597781 - 19597661
Alignment:
Q  182 aactctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactct 281  Q
    |||||||  ||| ||||||||||   ||||||||| ||||||||||       || ||||| | |||||||| ||||||||||||| ||||||||| ||     
T  19597781 aactcttgttgttttgatggattccctttgtttttgtcatgattttcatggaactgattttatcatatggcagatgaaggaatttgaagttgaagagtca 19597682  T
Q  282 tggactcaatttcttaaaatt 302  Q
    |||||||| ||||| ||||||    
T  19597681 tggactcagtttctcaaaatt 19597661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 24010385 - 24010464
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    |||||| ||||||| |||||||| |  || ||| |||| |||||||||||||| ||||| ||| ||||||||||||||||    
T  24010385 tttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattacttaagattagttatcagaatcttca 24010464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 29431071 - 29430984
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    |||||||||||||||  |||| | ||||||| | | |||| |||||||| ||||| ||||||||| |||||||| |||||||| ||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaataga 29430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 29881267 - 29881338
Alignment:
Q  249 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    |||||||||||| ||||||| |||||||| |||||||||||||| |||| |||| |||| || | |||||||    
T  29881267 tggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagttaccatagtcttcaa 29881338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 13417153 - 13417071
Alignment:
Q  78 attacaatcgagcaatttgtgattatctagcttgatttggcgtcagagacatacacacagttgttactccctcaatgttgtga 160  Q
    |||||||| || |||||||||||||||| | |||| |||| | | |||||||| ||||||||||| || |||| |||||||||    
T  13417153 attacaattgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtga 13417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 15443966 - 15444044
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
    |||||| ||||||| |||||||| | |||||||||||| ||||||||||||||  |||| ||  |||| ||||||||||    
T  15443966 tttgttttatggcatatgaaggagtatggagttgaagagtcttggactcaattatttaagatgagttaccagaatcttc 15444044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 19326058 - 19325968
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    ||||||||||||||||||| |||  |||||||||||| ||| | ||||||||||||||  | |||||  ||| ||||||| ||||| ||||    
T  19326058 ctcattttgttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaaatcagttttcagaatgttcaagtaga 19325968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 20133378 - 20133305
Alignment:
Q  247 tatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||| ||  |||| ||| | ||||| |||||||||    
T  20133378 tatggcaaatgaaagaatttggagttgaagattcttggattcagttatttaacattagctatcacaatcttcaa 20133305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 20140879 - 20140806
Alignment:
Q  247 tatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||||||||||||||||||||||||| | ||||||| |||  || |||| ||| | ||||| |||||||||    
T  20140879 tatggcaaatgaaggaatttggagttgaaaattcttggattcagctttttaacattagctatcacaatcttcaa 20140806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 22520337 - 22520252
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||||||| ||||||| |||| ||| ||| |||||| ||| |||||||||| | | ||| ||||| ||||| |||||||||||    
T  22520337 ctcattttgttttatggcatatgatggattttagagttgtagagtcttggactccactgcttcaaattagttatgagaatcttcaa 22520252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 18953003 - 18952906
Alignment:
Q  210 tgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    ||||||||||||||||||       | |||||| | |||||||| ||||||||||||||||||||  | || |||||||| || ||||||||| ||||    
T  18953003 tgtttttctcatgattttcatgggacccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtta 18952906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 18983050 - 18982953
Alignment:
Q  210 tgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    ||||||||||||||||||       | |||||| | |||||||| ||||||||||||||||||||  | || |||||||| || ||||||||| ||||    
T  18983050 tgtttttctcatgattttcatgggacccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18982953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 18997696 - 18997599
Alignment:
Q  210 tgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    ||||||||||||||||||       | |||||| | |||||||| ||||||||||||||||||||  | || |||||||| || ||||||||| ||||    
T  18997696 tgtttttctcatgattttcatgggacccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18997599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 36263053 - 36263105
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaa 290  Q
    |||||||||||||| | ||| | ||||||||||||||||| ||||||||||||    
T  36263053 attttgttatatggaagatggaagaatttggagttgaagagtcttggactcaa 36263105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 19357909 - 19357992
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||| ||| ||||| | |||| ||||||||||||| |||| ||||||||||||||  | |||||| ||| |||| ||||||||    
T  19357909 catttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttcaa 19357992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 19637287 - 19637248
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaaga 277  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  19637287 attttattatatggcaaatgaaggaatttggagttcaaga 19637248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 317
Target Start/End: Complemental strand, 19645692 - 19645621
Alignment:
Q  246 atatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatctt 317  Q
    |||||||| ||||||||||||||| ||||||| || |||||||  || ||||||||| ||||| ||| ||||    
T  19645692 atatggcagatgaaggaatttggaattgaagagtcatggactctgttacttaaaattagttatgagagtctt 19645621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 19722018 - 19722081
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaat 301  Q
    |||||||| ||||| | |||| ||||||||||||| |||| |||||||||||||| || |||||    
T  19722018 attttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaat 19722081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 24385208 - 24385283
Alignment:
Q  245 tatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||| | |||||| | |||||||||||| | ||||||| || ||||||||||||| || |||| |||||||||    
T  24385208 tatatggaagatgaagaactttggagttgaaaagtcttggagtcgatttcttaaaattagtcatcataatcttcaa 24385283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 19374778 - 19374820
Alignment:
Q  260 ggaatttggagttgaagactcttggactcaatttcttaaaatt 302  Q
    ||||||||||||||||   ||||||||||||||||||||||||    
T  19374778 ggaatttggagttgaacggtcttggactcaatttcttaaaatt 19374820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #57
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 21218778 - 21218724
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||| |||||||||||||||| ||||||||||| |||  | ||||||||||||||    
T  21218778 atttggttatatggcaaatgacggaatttggagatgataagtcttggactcaatt 21218724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #58
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 26256775 - 26256829
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||||||| ||||||| |||||||| | ||||||| |||| ||||||||||||||    
T  26256775 attttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaatt 26256829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 22037032 - 22037069
Alignment:
Q  184 ctctttgtgtgttgatggattgtatttgtttttctcat 221  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  22037032 ctctatgtgtgttgatggattgcatttgtttttctcat 22037069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #60
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 36255371 - 36255448
Alignment:
Q  243 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||||| ||||| |  |||||||||||||||| |||||||||||| |  ||||| || | ||||| |||||||||    
T  36255371 gttatatggaaaatggaaaaatttggagttgaagagtcttggactcaactcattaaagttagctatcaaaatcttcaa 36255448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 22473228 - 22473144
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaatt 322  Q
    |||||||||||||| || ||| |||||| |||  |||| | |||||||| ||||||||||||||  | |||||| || |||||||    
T  22473228 attttgttatatggaaattgatggaattgggaaatgaaaattcttggacccaatttcttaaaataaggtatcaggatgttcaatt 22473144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 3625740 - 3625821
Alignment:
Q  244 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttcaattaga 3625821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 25901350 - 25901273
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaat 314  Q
    ||||||||||||||| |||||||||| ||| ||||| |||| ||||||| ||||||  | |||||| |||||||||||    
T  25901350 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 25901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 25915368 - 25915291
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaat 314  Q
    ||||||||||||||| |||||||||| ||| ||||| |||| ||||||| ||||||  | |||||| |||||||||||    
T  25915368 cattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 25915291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 39379131 - 39379047
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaatt 322  Q
    ||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||  |||||||  ||||||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttatcatgatcttcaatt 39379047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 4570927 - 4570997
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttat 308  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| |||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 4570997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 4366565 - 4366478
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    |||||||| ||||||| |||||| |||| || |||||||| |||||||||| |||||||||| || |||| |||||||||||| ||||    
T  4366565 attttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaataga 4366478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 10218985 - 10219054
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    |||||||| |||||||||||||| |||||||  ||||||| |||||||||||||| ||||||||| ||||    
T  10218985 attttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 50645558 - 50645485
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttat 308  Q
    ||||||||||||| |||||||||||||| ||||||||| |||| ||||||| ||||||  |||||||| |||||    
T  50645558 ctcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttat 50645485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 21855453 - 21855373
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttc 318  Q
    |||||||||||||| | |||||||||||||| |||||||| |||||||||||| | |||||| || |||| || |||||||    
T  21855453 attttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagttaccataatcttc 21855373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 4015032 - 4014974
Alignment:
Q  241 ttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaa 299  Q
    ||||||||||||| |||||| ||||||| |||||||| |||||||||||||| ||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaa 4014974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 15961233 - 15961282
Alignment:
Q  243 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    ||||||||| |||||||| ||||||||| |||||| ||||||||||||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaatt 15961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 17560843 - 17560773
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttat 308  Q
    |||| ||||||||||| |||||| ||||||| |||||||| |||||||| | ||| |||| |||| |||||    
T  17560843 atttggttatatggcacatgaagaaatttggggttgaagattcttggacaccattccttataattagttat 17560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 14514903 - 14514987
Alignment:
Q  241 ttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaattaga 325  Q
    ||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||||| |||||  |||||||||| ||||    
T  14514903 ttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaataga 14514987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 18920883 - 18920754
Alignment:
Q  190 gtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactca 289  Q
    ||||||||||||||||||| |||||||||||   ||||       | ||||||||||||||| | |||| ||||||||||||| |||| |||||||||||    
T  18920883 gtgtgttgatggattgtatatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18920784  T
Q  290 atttcttaaaatttgttatcagaatcttca 319  Q
    ||| || |||||| ||| ||| ||||||||    
T  18920783 attcctcaaaattagttttcaaaatcttca 18920754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 18908927 - 18908798
Alignment:
Q  190 gtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactca 289  Q
    ||||||||||||||||| | |||||||||||   ||||       | ||||||||||||||| | |||| ||||||||||||| |||| |||||||||||    
T  18908927 gtgtgttgatggattgtctatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactca 18908828  T
Q  290 atttcttaaaatttgttatcagaatcttca 319  Q
    ||| || |||||| ||| ||| ||||||||    
T  18908827 attcctcaaaattagttttcaaaatcttca 18908798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 20975556 - 20975612
Alignment:
Q  236 tcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  20975556 tcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaatt 20975612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 18913628 - 18913546
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttca 319  Q
    ||||||||||||||| | |||| ||||||||||||| |||| |||||||||||||| || |||||| ||| ||| ||||||||    
T  18913628 cattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttca 18913546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 25698507 - 25698561
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggactaaatt 25698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 554423 - 554546
Alignment:
Q  185 tctttgtgtgttgatggattgtatttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttgg 284  Q
    |||| ||||||| | | ||||| ||||||||||||| ||||||       | ||| || |||||||||||||||  |||| ||||||| |||| ||||||    
T  554423 tcttcgtgtgttaaagaattgtctttgtttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttgg 554522  T
Q  285 actcaatttcttaaaatttgttat 308  Q
    |||||||| ||||||||| |||||    
T  554523 actcaattacttaaaattagttat 554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 25377073 - 25377145
Alignment:
Q  237 cattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatc 309  Q
    |||||||||||||||   |||||||| ||||||||| |||| ||||||| ||||||  |||||||| ||||||    
T  25377073 cattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttatc 25377145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 22051791 - 22051737
Alignment:
Q  266 tggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||||| |||| | ||||||||||||| | |||||| |||||||||||||||||    
T  22051791 tggagttcaagaatattggactcaatttttcaaaattagttatcagaatcttcaa 22051737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 20967700 - 20967749
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggact 287  Q
    ||||||||||||||||||||| | ||||| ||| |||||| |||||||||    
T  20967700 attttgttatatggcaaatgacgaaatttagagctgaagagtcttggact 20967749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 20980604 - 20980653
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggact 287  Q
    |||||||||||||| ||||||  |||||| |||||||||| |||||||||    
T  20980604 attttgttatatggaaaatgacagaatttagagttgaagagtcttggact 20980653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 27618461 - 27618573
Alignment:
Q  208 tttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    ||||||||| ||||||||||       ||||||||||||||||| ||||| | ||| | ||||||||||| ||||||||||| || |||||| || ||||    
T  27618461 tttgtttttgtcatgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagtta 27618560  T
Q  308 tcagaatcttcaa 320  Q
    |||||||||||||    
T  27618561 tcagaatcttcaa 27618573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 29390288 - 29390340
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||||||||||||| |||| |||||||||||||||||| ||||| ||| ||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaatt 29390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 11339492 - 11339435
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||| |||||||||||||||||||  || |||||| || |||| ||||||||||||||    
T  11339492 ctcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaatt 11339435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 11345174 - 11345117
Alignment:
Q  235 ctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||| |||||||||||||||||| | || |||||| || |||| ||||||||||||||    
T  11345174 ctcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaatt 11345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 11338644 - 11338592
Alignment:
Q  240 tttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatt 292  Q
    |||||||||||||||||||| || |||||| || |||| |||||| |||||||    
T  11338644 tttgttatatggcaaatgaaagagtttggatttcaagaatcttggtctcaatt 11338592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 4769 - 4663
Alignment:
Q  208 tttgtttttctcatgattttnnnnnnnctcattttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgtta 307  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||| ||  | |||||| ||||    
T  4769 tttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtta 4670  T
Q  308 tcagaat 314  Q
    |||||||    
T  4669 tcagaat 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 7471 - 7547
Alignment:
Q  246 atatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaatt 322  Q
    ||||||||||||||||||||||||||||| || ||||||  |||||| ||||||||| | |||| ||||||||||||    
T  7471 atatggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattagctatcggaatcttcaatt 7547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 13800 - 13718
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||| |||||||||| ||||||||||| |||  ||| || ||||||||||| |||||||||||  | ||||| |||||||||    
T  13800 attttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaa 13718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 22635 - 22553
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttatcagaatcttcaa 320  Q
    ||||| |||||||||| ||||||||||| |||  ||| || ||||||||||| |||||||||||  | ||||| |||||||||    
T  22635 attttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaa 22553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 5438 - 5487
Alignment:
Q  238 attttgttatatggcaaatgaaggaatttggagttgaagactcttggact 287  Q
    |||||||||||||||| |||||  ||||| |||||||||| |||||||||    
T  5438 attttgttatatggcagatgaaaaaatttagagttgaagagtcttggact 5487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University