View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_14 (Length: 416)

Name: NF19916_low_14
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_14
NF19916_low_14
[»] chr2 (2 HSPs)
chr2 (19-237)||(25293664-25293880)
chr2 (265-374)||(21195640-21195749)
[»] chr7 (5 HSPs)
chr7 (299-369)||(27776180-27776250)
chr7 (265-374)||(33181174-33181283)
chr7 (297-374)||(35513469-35513546)
chr7 (317-369)||(48984145-48984197)
chr7 (265-334)||(2495800-2495869)
[»] chr8 (4 HSPs)
chr8 (265-374)||(11819779-11819888)
chr8 (265-374)||(27750733-27750842)
chr8 (265-374)||(33727837-33727946)
chr8 (265-359)||(6536538-6536632)
[»] chr1 (2 HSPs)
chr1 (265-374)||(6122797-6122906)
chr1 (296-369)||(9165190-9165263)
[»] chr4 (2 HSPs)
chr4 (265-365)||(8030168-8030268)
chr4 (318-369)||(31826617-31826668)
[»] chr3 (3 HSPs)
chr3 (318-369)||(8075144-8075195)
chr3 (318-374)||(19341804-19341860)
chr3 (278-366)||(32651415-32651503)
[»] chr5 (1 HSPs)
chr5 (294-369)||(21549130-21549205)
[»] scaffold0300 (1 HSPs)
scaffold0300 (324-373)||(4344-4393)
[»] chr6 (2 HSPs)
chr6 (265-362)||(20213056-20213153)
chr6 (265-362)||(22107079-22107176)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 25293880 - 25293664
Alignment:
Q  19 gagtgagcggcgggtgatggtgggtttgagaattgggtggtggagagaggggagtagtggtggttgttgggttatggaggaagccattgaggagaggaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25293880 gagtgagcggcgggtgatggtgggtttgagaattgggtggtggagagaggggagtggtggtggttgttgggttatggaggaagccattgaggagaggaga 25293781  T
Q  119 gtagtgagttaggttgttcatgacacgcagaggttgaactaggagaggtgccaattaatgtggggtctaccttagtttagattagattatactcgtgaaa 218  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25293780 gtagtgagttaggttgttcatg--acgcagaggttgaactaggagaggtgccaattaatgtggggtctaccttagtttagattagattatactcgtgaaa 25293683  T
Q  219 tgtttgccagcaaggtctt 237  Q
    ||| |||||||||||||||    
T  25293682 tgtctgccagcaaggtctt 25293664  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 21195640 - 21195749
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| ||| |||||| |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   |||| |||||| |||||||||||||||    
T  21195640 gaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagttccaagcctataccactagggca 21195739  T
Q  365 acccagatgg 374  Q
    ||||| ||||    
T  21195740 acccaaatgg 21195749  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 27776250 - 27776180
Alignment:
Q  299 gaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggcaaccca 369  Q
    ||||||||||| | ||| || ||||||||||||||| | |||||||||||||||||||| ||| |||||||    
T  27776250 gaaaattgaacctgagacttcgaggaggagcacactctcaagtcccaagcgtataccaccaggccaaccca 27776180  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 33181174 - 33181283
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| ||| |||| | |||||||  ||||||  ||| |||| | |||| |||||  ||||||||||   ||||||||||| |||||||||||||||    
T  33181174 gaagctaaattagcccacccaaattgacactagagggaatcgaacctgagatcttgagttggagcacactcccaagtcccaagcctataccactagggca 33181273  T
Q  365 acccagatgg 374  Q
    ||||| ||||    
T  33181274 acccaaatgg 33181283  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 35513546 - 35513469
Alignment:
Q  297 gagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggcaacccagatgg 374  Q
    |||||||| |||| | |||| | ||||||||||||||| | |||||||||||  ||||||||||| ||||||| ||||    
T  35513546 gagaaaatcgaacatgagatatcgaggaggagcacactctcaagtcccaagcaaataccactaggccaacccaaatgg 35513469  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 48984145 - 48984197
Alignment:
Q  317 tttgaggaggagcacactattaagtcccaagcgtataccactagggcaaccca 369  Q
    ||||||||||||||||||   ||||||||||| ||||||||||| ||||||||    
T  48984145 tttgaggaggagcacactcccaagtcccaagcctataccactagagcaaccca 48984197  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 2495800 - 2495869
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacact 334  Q
    |||| ||| ||||||||| |||||||||  |||||| ||| |||| | ||||||| ||||||||||||||    
T  2495800 gaagttaaattaacccatttaaattgatattagagataatcgaacctgagattttaaggaggagcacact 2495869  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 11819888 - 11819779
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| ||| |||| | |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   ||||||||||| |||||||||||||||    
T  11819888 gaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactagggca 11819789  T
Q  365 acccagatgg 374  Q
    ||||| ||||    
T  11819788 acccaaatgg 11819779  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 27750842 - 27750733
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| |||  ||||| |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   ||||||||||| |||||||| ||||||    
T  27750842 gaagctaaattagtccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccacgagggca 27750743  T
Q  365 acccagatgg 374  Q
    ||||| ||||    
T  27750742 acccaaatgg 27750733  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 33727837 - 33727946
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| ||| |||||| |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   ||||| ||| | |||||||||||||||    
T  33727837 gaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacacttccaagtctcaaacctataccactagggca 33727936  T
Q  365 acccagatgg 374  Q
    ||||| ||||    
T  33727937 acccaaatgg 33727946  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 6536632 - 6536538
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccacta 359  Q
    |||||||| |||||||| ||||||||   | ||||| |||||||| | |||  |||||||||||||||||  || |||||||||  |||||||||    
T  6536632 gaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccacta 6536538  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 6122906 - 6122797
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| ||| |||| | |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   ||||||||||| |||||||||||||||    
T  6122906 gaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactagggca 6122807  T
Q  365 acccagatgg 374  Q
    ||||| ||||    
T  6122806 acccaaatgg 6122797  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 9165190 - 9165263
Alignment:
Q  296 agagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggcaaccca 369  Q
    ||||| |||||||| | ||| ||||||||||||||||||   | |||||||||  ||||||||||| |||||||    
T  9165190 agagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaaccca 9165263  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 8030168 - 8030268
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggca 364  Q
    |||||||| ||| |||| | |||||||  ||||||  ||| |||||| |||  |||||||||||||||||   ||||||||||| |||||||||||||||    
T  8030168 gaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcctataccactagggca 8030267  T
Q  365 a 365  Q
    |    
T  8030268 a 8030268  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 31826668 - 31826617
Alignment:
Q  318 ttgaggaggagcacactattaagtcccaagcgtataccactagggcaaccca 369  Q
    |||||||||||||||||   || |||||||| ||||||||||||||||||||    
T  31826668 ttgaggaggagcacactcgcaaatcccaagcctataccactagggcaaccca 31826617  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 8075144 - 8075195
Alignment:
Q  318 ttgaggaggagcacactattaagtcccaagcgtataccactagggcaaccca 369  Q
    |||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  8075144 ttgaggaggagcacactcccaagtcccaagcctataccactagggcaaccca 8075195  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 19341860 - 19341804
Alignment:
Q  318 ttgaggaggagcacactattaagtcccaagcgtataccactagggcaacccagatgg 374  Q
    |||||||||||||||||   ||||| ||||  |||||||||||||||||||| ||||    
T  19341860 ttgaggaggagcacactcccaagtctcaagtctataccactagggcaacccaaatgg 19341804  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 366
Target Start/End: Original strand, 32651415 - 32651503
Alignment:
Q  278 cccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggcaac 366  Q
    ||||||||||||||  ||||||| ||| |||  | |||| |||||||||||||||||   | |||||||||  ||||||||||| ||||    
T  32651415 cccatctaaattgacactagagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 32651503  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 21549130 - 21549205
Alignment:
Q  294 ctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactagggcaaccca 369  Q
    ||||||||||| |||||| ||| ||| ||||||||||||||   | |||||||||  ||||||||||| |||||||    
T  21549130 ctagagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaataccactaggccaaccca 21549205  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 4393 - 4344
Alignment:
Q  324 aggagcacactattaagtcccaagcgtataccactagggcaacccagatg 373  Q
    |||||||||||   || |||||||| ||||||||||||||||||||||||    
T  4393 aggagcacactcccaaatcccaagcctataccactagggcaacccagatg 4344  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 20213153 - 20213056
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactaggg 362  Q
    |||||||| ||| |||| | |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   | |||||||||||||||||||||||    
T  20213153 gaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactcccaggtcccaagcgtataccactaggg 20213056  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 22107176 - 22107079
Alignment:
Q  265 gaagctaatttaacccatctaaattgatcctagagaaaattgaacttaagattttgaggaggagcacactattaagtcccaagcgtataccactaggg 362  Q
    |||||||| ||| |||| | |||||||  ||||||  ||| |||| | |||  |||||||||||||||||   | |||||||||||||||||||||||    
T  22107176 gaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactcccaggtcccaagcgtataccactaggg 22107079  T

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