View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_15 (Length: 412)

Name: NF19916_low_15
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_15
NF19916_low_15
[»] chr4 (3 HSPs)
chr4 (19-404)||(43396881-43397256)
chr4 (126-179)||(27131678-27131731)
chr4 (126-189)||(7422153-7422216)
[»] chr5 (5 HSPs)
chr5 (333-398)||(32358539-32358605)
chr5 (128-174)||(18542218-18542264)
chr5 (126-174)||(12976658-12976706)
chr5 (128-196)||(28735820-28735887)
chr5 (227-267)||(38713335-38713375)
[»] chr6 (2 HSPs)
chr6 (126-179)||(2468478-2468531)
chr6 (134-182)||(10338607-10338655)
[»] chr1 (2 HSPs)
chr1 (125-198)||(36552252-36552325)
chr1 (132-173)||(2445459-2445500)
[»] chr8 (1 HSPs)
chr8 (138-179)||(18992471-18992512)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 43397256 - 43396881
Alignment:
Q  19 agataaatgattcaaattccgactgttaacataacatactaaaatcctatatggcccctacacttcagattgaaaatatgttcgtgtctgacggaattgg 118  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||||||| |||||||||||    
T  43397256 agatatatgattcaaattccgactattaacataacatactaaaatcctatatggtcc----acttcagattgaaaatatgttcgtgtccgacggaattgg 43397161  T
Q  119 tgtacaacaacacatgtgattacattcaattactactattttcttaaat-gattactaatgtttatgtgtcattgtcgtatctgtgtcnnnnnnnctaga 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||       |||||       |||||    
T  43397160 tgtacaacaacacatgtgattacattcaattactgctattttcttaaattgattactaatgtttatgtgtcattgt-------gtgtcaaaaaaactaga 43397068  T
Q  218 gtaaagacacaatttagtctctcacaattttatcacggtctaatttaatccattacttnnnnnnncattaaagtagtccttgatattttcaaactggaga 317  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||       |||||||||||||||||||||||||||||||| ||    
T  43397067 gtaaagacacaatttagtctctcacaattttatcacggcctagtttaatccattacttaaaaaaacattaaagtagtccttgatattttcaaactgggga 43396968  T
Q  318 caaattagtcctgaactcattataacagaggatttatttatcttcaatttgaaaatgtcaatgactagtttggtattatttcttctc 404  Q
     |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43396967 taaattagtcctgaactcattatacaagaggacttatttatcttcaatttgaaaatgtcaatgactagtttggtattatttcttctc 43396881  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 27131678 - 27131731
Alignment:
Q  126 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 179  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  27131678 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 27131731  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 7422216 - 7422153
Alignment:
Q  126 caacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtca 189  Q
    |||||||| | |||||||||||| ||| ||||||||| |||| ||||| ||||| |||||||||    
T  7422216 caacacatataattacattcaatcacttctattttctcaaattattacaaatgtctatgtgtca 7422153  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 32358605 - 32358539
Alignment:
Q  333 ctcattataacagagg-atttatttatcttcaatttgaaaatgtcaatgactagtttggtattattt 398  Q
    |||||||||||||||| | |||||| ||  ||||||||||||||||| | |||||||||||||||||    
T  32358605 ctcattataacagagggacttatttgtccccaatttgaaaatgtcaagggctagtttggtattattt 32358539  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 18542218 - 18542264
Alignment:
Q  128 acacatgtgattacattcaattactactattttcttaaatgattact 174  Q
    |||||||||||||||||||||||||  |||||||| |||| ||||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattact 18542264  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 12976658 - 12976706
Alignment:
Q  126 caacacatgtgattacattcaattactactattttcttaaatgattact 174  Q
    ||||||||||||||||||||| | |||  ||||||||||||| ||||||    
T  12976658 caacacatgtgattacattcattgacttttattttcttaaattattact 12976706  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 28735820 - 28735887
Alignment:
Q  128 acacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgt 196  Q
    |||||| | |||||||||||| ||| |||||||||||||| ||||| | ||| ||||||||| ||||||    
T  28735820 acacatataattacattcaatcacttctattttcttaaattattac-agtgtctatgtgtcagtgtcgt 28735887  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 38713375 - 38713335
Alignment:
Q  227 caatttagtctctcacaattttatcacggtctaatttaatc 267  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  38713375 caatttaatctctcacaattttatcacggtccaattcaatc 38713335  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 2468478 - 2468531
Alignment:
Q  126 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 179  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  2468478 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 2468531  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 10338655 - 10338607
Alignment:
Q  134 gtgattacattcaattactactattttcttaaatgattactaatgttta 182  Q
    ||||||||||||||| ||| |||||||||||||| ||||  ||||||||    
T  10338655 gtgattacattcaatcacttctattttcttaaattattatcaatgttta 10338607  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 36552252 - 36552325
Alignment:
Q  125 acaacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgtat 198  Q
    |||||||| |||||| ||||||| || | || |||| || |||||||||| |||| ||||||||||||||||||    
T  36552252 acaacacacgtgatttcattcaagtatttctgttttttttaatgattacttatgtctatgtgtcattgtcgtat 36552325  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 2445459 - 2445500
Alignment:
Q  132 atgtgattacattcaattactactattttcttaaatgattac 173  Q
    ||||||||||||||||| ||| | ||||||||||||||||||    
T  2445459 atgtgattacattcaatcacttccattttcttaaatgattac 2445500  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 18992471 - 18992512
Alignment:
Q  138 ttacattcaattactactattttcttaaatgattactaatgt 179  Q
    |||||||||||||||| |||||||| |||| |||||||||||    
T  18992471 ttacattcaattactattattttctaaaattattactaatgt 18992512  T

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