View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_16 (Length: 411)
Name: NF19916_low_16
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_16 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 28675022 - 28674620
Alignment:
| Q |
9 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28675022 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtgataaatcatggaattccaacacatattttggatgagatgat |
28674923 |
T |
|
| Q |
109 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttact |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28674922 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctctccaattttact |
28674823 |
T |
|
| Q |
209 |
ctttaccaagaccaatctgctgattggagggactcacttgcatttttctgggaacctcatccgccaaaagctgaagaactaccaaaagtttgcaggtttg |
308 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28674822 |
ctttaccaagaccaatctgctgattggagggacacacttgcatttttctgggaacctcatcccccaaaagctgaagaactaccaaaagtttgcaggtttg |
28674723 |
T |
|
| Q |
309 |
tcaaagtactactttaggagtaagcaacaaatttaatagnnnnnnnnnnnatttgtcttaactcttccattttttggtgacattattctttagtatattg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674722 |
ccaaagtactactttaggagtaagcaacaaatttaatagtttttttttttatttgtcttaactcttccattttttggtgacattattctttagtatattg |
28674623 |
T |
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| Q |
409 |
tca |
411 |
Q |
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||| |
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| T |
28674622 |
tca |
28674620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 28670878 - 28670595
Alignment:
| Q |
9 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
108 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28670878 |
gagatgaagttgtaagaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacagattttggatgagatgat |
28670779 |
T |
|
| Q |
109 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttact |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28670778 |
caatggaacttgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatcttaccaaaaaagttgtttatctttccaattttact |
28670679 |
T |
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| Q |
209 |
ctttaccaagaccaatctgctgattggagggactcacttgcatttttctgggaacctcatccgccaaaagctgaagaactacca |
292 |
Q |
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|| |||| ||||||||||||||||||||||||| |||||||||||||||||| ||| |||| || ||||| || ||||||||| |
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| T |
28670678 |
ctctacctagaccaatctgctgattggagggacacacttgcatttttctgggcacccgatcctcctaaagccgatgaactacca |
28670595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 28642295 - 28641996
Alignment:
| Q |
9 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
108 |
Q |
| |
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||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
28642295 |
gagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgat |
28642196 |
T |
|
| Q |
109 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttact |
208 |
Q |
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||||||||||||||||||||| ||||| ||| | |||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28642195 |
caaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttact |
28642096 |
T |
|
| Q |
209 |
ctttaccaagaccaatctgctgattggagggactcacttgcatttttctgggaacctcatccgccaaaagctgaagaactaccaaaagtttgcaggtttg |
308 |
Q |
| |
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|||| | |||| ||||||||||| ||||||||| |||||||||||||||||| |||||| || || || | ||| ||||||||| |||||||||||||| |
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| T |
28642095 |
ctttccgaagatcaatctgctgagtggagggacacacttgcatttttctgggcacctcaccctcccaatgttgatgaactaccaccagtttgcaggtttg |
28641996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 28651156 - 28650857
Alignment:
| Q |
9 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
108 |
Q |
| |
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||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
28651156 |
gagatgaagttgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttgcatgagatgat |
28651057 |
T |
|
| Q |
109 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttact |
208 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| | |||| |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28651056 |
caaaggaacttgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttact |
28650957 |
T |
|
| Q |
209 |
ctttaccaagaccaatctgctgattggagggactcacttgcatttttctgggaacctcatccgccaaaagctgaagaactaccaaaagtttgcaggtttg |
308 |
Q |
| |
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|||| | |||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||| || || | ||| ||||||||| |||||||||||||| |
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| T |
28650956 |
ctttccgaagatcaatctgctgagtggagggacacacttgcatttttctgggcacctcatcctcccaatgttgatgaactaccaccagtttgcaggtttg |
28650857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 28696382 - 28696144
Alignment:
| Q |
10 |
agatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696382 |
agatgaagttgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatc |
28696283 |
T |
|
| Q |
110 |
aaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactc |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| || ||||| || || | |||| || ||| |||||||||||| |||| |||| || || |
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| T |
28696282 |
aaaggaacttgtagatttcatcaacaagatgccaaggtgagaaaagagtattatacatgcgatcccaacaagaaagttgtttatgtttctaattatagtc |
28696183 |
T |
|
| Q |
210 |
tttaccaagaccaatctgctgattggagggactcacttg |
248 |
Q |
| |
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||||||| || | ||||| |||||||||||||||||| |
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| T |
28696182 |
tttaccatgatcctgctgctaattggagggactcacttg |
28696144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 28691498 - 28691259
Alignment:
| Q |
9 |
gagatgaagttgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgat |
108 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || | || |||||||||||||||| |
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| T |
28691498 |
gagatgaagctgtgagaaaagttgaaaatgcatgtgagaagtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgat |
28691399 |
T |
|
| Q |
109 |
caaaggaacttgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttact |
208 |
Q |
| |
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||||||||||||||||||||| |||||||||| | || ||||| ||||| ||||| ||||||| | ||| ||||||||||| |||| |||| || | |
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| T |
28691398 |
caaaggaacttgtagatttcatcaacaagatgttatggtaaggaaagagtattacacacgtgatcctaacaagaaagttgtttacgtttctaattatagt |
28691299 |
T |
|
| Q |
209 |
ctttaccaagaccaatctgctgattggagggactcacttg |
248 |
Q |
| |
|
|||||||| || | ||||| |||||||||||||||||| |
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| T |
28691298 |
ctttaccatgatcctgctgctaattggagggactcacttg |
28691259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 28717651 - 28717570
Alignment:
| Q |
59 |
tttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatg |
140 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatg |
28717570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 41238469 - 41238565
Alignment:
| Q |
45 |
agaaatggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaacttgtagatttcaccaacaagatgc |
141 |
Q |
| |
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|||| |||||||| || ||||| || |||||||| |||||| || ||||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
41238469 |
agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatgc |
41238565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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