View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19916_low_2 (Length: 698)
Name: NF19916_low_2
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 331 - 681
Target Start/End: Original strand, 41796289 - 41796637
Alignment:
| Q |
331 |
ctaaaattgtcaaatgatgtttataattgggatggaacttggaagtggtaccatatgtccttgcaaagccaacgggggtatatagaaatcttaccctgaa |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41796289 |
ctaaaattgtcaaatgatgtttataattgggatggaacttggaagtggtaccatatgtccttgcaaagccaacgggggtatatagaaatcttaccctcaa |
41796388 |
T |
|
| Q |
431 |
acagagaatcgtataaaactatagacatagatatggtagaaaataattggtcagaccaattggtaccaacaaaaagaatgaagacttttatttctgacag |
530 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41796389 |
acagagaatcgtataaaactatagaca--gatatggtagaaaataattggtcagatcaattggtaccaacaaaaagaatgaagacttttatttctgacag |
41796486 |
T |
|
| Q |
531 |
agacccaagattttgtcatctaaatggccgataatccaataatgccttgacatatgcatcatttagaatatgaatcccaagtgatcctctaaactaaagt |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41796487 |
agacccaagattttgtcatctaaatggccgataatccaataatgccttgacatatgcatcatttagaatatgaatcccaagtgatcctctaaactaaagt |
41796586 |
T |
|
| Q |
631 |
gaagtcaattcatttggacactgaaagggacttagtttgatatatcccttt |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41796587 |
gaagtcaattcatttggacactgaaagggacttagtttgatatatcccttt |
41796637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 587 - 681
Target Start/End: Original strand, 41762568 - 41762662
Alignment:
| Q |
587 |
catcatttagaatatgaatcccaagtgatcctctaaactaaagtgaagtcaattcatttggacactgaaagggacttagtttgatatatcccttt |
681 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||||||||| | ||||||| |
|
|
| T |
41762568 |
catcatttagaggaaaaatcccaagtgatcctctaaactaaagtgaagtcaatttattttgaaattgaaagggacttagtttgatctttcccttt |
41762662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 681
Target Start/End: Original strand, 41792856 - 41792931
Alignment:
| Q |
606 |
cccaagtgatcctctaaactaaagtgaagtcaattcatttggacactgaaagggacttagtttgatatatcccttt |
681 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| || | |||||||||||| ||||||| |||| |||| |
|
|
| T |
41792856 |
cccaagtgatcctctaaacaaaagtgaagtcaaatcatttagaaattgaaagggactttgtttgatctatcacttt |
41792931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University