View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_21 (Length: 357)
Name: NF19916_low_21
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 341
Target Start/End: Original strand, 33300579 - 33300918
Alignment:
| Q |
4 |
aaaacataaatgtccatttaaaaacaaagttcaacccatattaattaatagtagt---taataatagttgacctaatttgtattactccatgattcataa |
100 |
Q |
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| T |
33300579 |
aaaacataaatgtccatttaaaaacaaagttcaacccatattaattaatagtagtagttaataatagttgacctaatttgtattactccatgattcataa |
33300678 |
T |
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| Q |
101 |
ctgattagtgtcaatccatgattagttaaagggaaatgcttgctgatcatgaaatttttgcaatcctattcaataaacagcaaagaaggaaatgtagaag |
200 |
Q |
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| T |
33300679 |
ctgattagtgtcaatccatgattagttaaagggaaatgcttgctgatcatgaa-tttttgcaatcctattcaataaacagcaaagaaggaaatgtagaag |
33300777 |
T |
|
| Q |
201 |
ctaatatgcatattgtcaggttttgctaattaaatccccatattctataatctgtttcgtcacacttaagaaattagcaatattaagcagcctaatgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33300778 |
ctaatatgcatattgtcaggttttgctaattaaatctccatattctataatctgtttcgtcacacttaagaaattagcaatattaagcagcctaatgata |
33300877 |
T |
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| Q |
301 |
agctattataatgataagctgattcattcatcccatacatg |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33300878 |
agctattataatgataagctgattcattcatcccatacatg |
33300918 |
T |
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