View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_24 (Length: 315)
Name: NF19916_low_24
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 33515185 - 33514907
Alignment:
| Q |
13 |
attctcattgccattctaggttttcctttctttgtttttgtcctcattgctgaattcacaaaatttacaccatttttctctaaacttgctattacctctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33515185 |
attctcattgccattctaggttttcctttctttgtttttgtcctcattgctgaattcacaaaatttacaccatttttctctaaacttgctattacctctt |
33515086 |
T |
|
| Q |
113 |
ctgtatgtgaaatttctgaatttgtttcgtccgaatctcctaaacattctgaaaattaagcaactcattcatactttaatataatatagaaaacaaacaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
33515085 |
ctgtatgtgaaatttctgaatttgtttcgtccgaatctcctaaacattctgcaaattaagcaacccattcatactttaaaataatatagaaaacaaacaa |
33514986 |
T |
|
| Q |
213 |
ggctattgacttttttagcttatgagatatatattctcaatcaaaagaagtctacgacttttcatacaagaaaactaaa |
291 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33514985 |
ggctattgacttttttagcttatgagctatatattctcaattaaaagaagtctacgacttttcatacaagaaaactaaa |
33514907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 15642937 - 15643064
Alignment:
| Q |
13 |
attctcattgccattctaggttttcctttctttgtttttgtcctcattgctgaattcacaaaatttacaccatttttctctaaacttgctattacctctt |
112 |
Q |
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||||||||||||||| ||||||||||||| ||||| || ||| | |||||||| |||||||| ||||||||||| ||||| ||| |||||| || | |
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| T |
15642937 |
attctcattgccattttaggttttcctttttttgtcttcacccttgtagctgaattaacaaaattcacaccattttttgctaaagttgatattacttcat |
15643036 |
T |
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| Q |
113 |
ctgtatgtgaaatttctgaatttgtttc |
140 |
Q |
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| | ||||| |||||||||||||||| |
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| T |
15643037 |
ccatttgtgatgtttctgaatttgtttc |
15643064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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