View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_28 (Length: 290)
Name: NF19916_low_28
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6519685 - 6519979
Alignment:
| Q |
1 |
catacctcatcaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6519685 |
catacctcattaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttac |
6519784 |
T |
|
| Q |
101 |
catagcttcttctacaaaaacttccaacgaaaaacacataatctcttcttacaatg--------------------atcccttcttcaaatttacgnnnn |
180 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6519785 |
cataacttcttctacaaaaacttccaacgaaaaacacataatctcttcttacaatgacctcagtgttaccttggaaatcccttcttcaaatttacgtttt |
6519884 |
T |
|
| Q |
181 |
nnncttgttaggggaagtccttttttgacattttctgtcacacaactaacccatctttctttcactacaagccatgagattctttctttttattc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6519885 |
tttcttgttaggggaagtccttttttgacattttctgtcacacaactaacccatctttctttcactacaagccatgatattctttctttttattc |
6519979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6466396 - 6466293
Alignment:
| Q |
1 |
catacctcatcaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttac |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||| | |||| |||||||||||| ||||||| || |
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| T |
6466396 |
catatctcatcaaatcttcaaactcatcactttctctttcttacccatctcgtttcttcaactcttctttcatataccaagttttcaaccctgatctcac |
6466297 |
T |
|
| Q |
101 |
cata |
104 |
Q |
| |
|
|||| |
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|
| T |
6466296 |
cata |
6466293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 6460938 - 6461071
Alignment:
| Q |
3 |
tacctcatcaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttacca |
102 |
Q |
| |
|
|||||||||| ||| || |||||||| |||||||| || || ||||| | || | | | | |||||| ||||||||||||||||| |||||||||||||| |
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| T |
6460938 |
tacctcatcagatcttccaactcatctctttctgtctcatatccatctctttccatcagcccttctgctatatcccaagttttcactgctgatcttacca |
6461037 |
T |
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| Q |
103 |
tagcttcttctacaaaaacttccaacgaaaaaca |
136 |
Q |
| |
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| |||| ||||||||||||||||| |||||||| |
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| T |
6461038 |
tcacttcctctacaaaaacttccaatgaaaaaca |
6461071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 6497734 - 6497601
Alignment:
| Q |
3 |
tacctcatcaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgctgatcttacca |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||||| || | | | | |||||| |||||| |||||||||| |||||||||||||| |
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| T |
6497734 |
tacctcatcaaatcatcagactcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgctgatcttacca |
6497635 |
T |
|
| Q |
103 |
tagcttcttctacaaaaacttccaacgaaaaaca |
136 |
Q |
| |
|
| |||| |||| ||||||||||| |||||||| |
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|
| T |
6497634 |
tcacttccgctacgaaaacttccaatgaaaaaca |
6497601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 6472157 - 6472200
Alignment:
| Q |
3 |
tacctcatcaaatcatcaaactcatcactttctgtttcttaccc |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6472157 |
tacctcatcaaatcatcaaactcatcactttctgtttcttaccc |
6472200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 6506547 - 6506504
Alignment:
| Q |
3 |
tacctcatcaaatcatcaaactcatcactttctgtttcttaccc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
6506547 |
tacctcatcaaatcatcaaactcatcactttctgtctcataccc |
6506504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6515206 - 6515252
Alignment:
| Q |
3 |
tacctcatcaaatcatcaaactcatcactttctgtttcttacccatc |
49 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||| |||||||| |
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| T |
6515206 |
tacctcatcagatcaacaaactcatcactttctttttcatacccatc |
6515252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 6466187 - 6466115
Alignment:
| Q |
184 |
cttgttaggggaagtccttttttgacattttctgtcacacaactaacccatctttctttcactacaagccatg |
256 |
Q |
| |
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|||||||| |||||||| ||||||||||| ||||| ||||||| ||| | |||||| |||| |||| ||||| |
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| T |
6466187 |
cttgttagaggaagtccctttttgacattctctgtaacacaaccaacacctctttcaatcacaacaatccatg |
6466115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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