View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_3 (Length: 688)

Name: NF19916_low_3
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_3
NF19916_low_3
[»] chr1 (3 HSPs)
chr1 (417-678)||(3400663-3400925)
chr1 (181-274)||(3401160-3401253)
chr1 (268-350)||(3400992-3401066)
[»] chr8 (2 HSPs)
chr8 (423-519)||(21533260-21533356)
chr8 (644-678)||(27811820-27811854)
[»] chr2 (2 HSPs)
chr2 (453-543)||(41574356-41574446)
chr2 (572-604)||(41574305-41574337)
[»] chr6 (2 HSPs)
chr6 (644-678)||(19839884-19839918)
chr6 (644-678)||(30822547-30822581)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 417 - 678
Target Start/End: Complemental strand, 3400925 - 3400663
Alignment:
Q  417 ataaaaatctaattatctgtcaattttggcacataatgttattttttattgggacacgtggacatagatatacacacagacaagtcatgatttgaatgca 516  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3400925 ataaaaatctaattatttgtcaattttggcacataatgttattttttattgggacacgtggacatagatatacacacagacaagtcatgatttgaatgca 3400826  T
Q  517 ttatagatagagtaattacaaagtactattaatataatgagttnnnnnnngaaatagttattcagaagagttgtcgattataatgggataaaatcttgca 616  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3400825 ttatagatagagtaattacaaagtactattaatataatgagttaaaaaaagaaatagttattcagaagagttgtcgattataatgggataaaatcttgca 3400726  T
Q  617 tttgtgcttctgcgttcaac-gtatagtatcaatttttataaaaatttcaattcattcctatg 678  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3400725 tttgtgcttctgcgttcaactgtatagtatcaatttttataaaaatttcaattcattcctatg 3400663  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 3401253 - 3401160
Alignment:
Q  181 tttcttactgattataaacaatagagaatatgcatgatctatttgccgttcacttaatttcttaatttaggtaccttgtttactatatttgtca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  3401253 tttcttactgattataaacaatagagaatatgcatgatctattttccattcacttaatttcttaatttaggtaccttgtttactacatttgtca 3401160  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 3401066 - 3400992
Alignment:
Q  268 tttgtcatcaacacccattgtggtttggatattagtattttagttttttagatggtgttatttgatatcaatagccattcgac 350  Q
    ||||| ||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  3401066 tttgtaatcaacatccattgtggtttggatattagtattttag--------atggtgttatttgatatcaatagccattcgac 3400992  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 423 - 519
Target Start/End: Original strand, 21533260 - 21533356
Alignment:
Q  423 atctaattatctgtcaattttggcacataatgttattttttattgggacacgtggacatagatatacacacagacaagtcatgatttgaatgcatta 519  Q
    ||||| |||| |||||||||||| | | |||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  21533260 atctagttatatgtcaattttggaaaacaatgttatttttgattaggacacttggacatagatatacacagagacaagtcatgatttgaaagcatta 21533356  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 644 - 678
Target Start/End: Complemental strand, 27811854 - 27811820
Alignment:
Q  644 atcaatttttataaaaatttcaattcattcctatg 678  Q
    |||||||||||||||||| ||||||||||||||||    
T  27811854 atcaatttttataaaaatctcaattcattcctatg 27811820  T

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Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 41574446 - 41574356
Alignment:
Q  453 tgttattttttattgggacacgtggacatagatatacacacagacaagtcatgatttgaatgcattatagatagagtaattacaaagtact 543  Q
    |||||||||||||| |||| | | | |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  41574446 tgttattttttattaggacgcattgtcatagacatacacagagacaagtcatgatttgaatgcattatagctagagtaattaaaaattact 41574356  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 604
Target Start/End: Complemental strand, 41574337 - 41574305
Alignment:
Q  572 agttattcagaagagttgtcgattataatggga 604  Q
    |||||||||||||||| ||||||||||||||||    
T  41574337 agttattcagaagagtggtcgattataatggga 41574305  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 644 - 678
Target Start/End: Original strand, 19839884 - 19839918
Alignment:
Q  644 atcaatttttataaaaatttcaattcattcctatg 678  Q
    |||||||||||||||||| ||||||||||||||||    
T  19839884 atcaatttttataaaaatctcaattcattcctatg 19839918  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 644 - 678
Target Start/End: Complemental strand, 30822581 - 30822547
Alignment:
Q  644 atcaatttttataaaaatttcaattcattcctatg 678  Q
    |||||||||||||||||| ||||||||||||||||    
T  30822581 atcaatttttataaaaatctcaattcattcctatg 30822547  T

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