View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_38 (Length: 257)
Name: NF19916_low_38
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 5182684 - 5182908
Alignment:
| Q |
16 |
atagcgtgaaaatacataagctgcaaaatgtagcttatgtataaacgcacatccacttttcatacaccgccaaaacaaacagctactacatctttagctc |
115 |
Q |
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| T |
5182684 |
atagcgtgaaaatacataagctgcaaaatgtagtttatgtataaacgcacatccacttttcatacaccgccaaa-caaacagctactacatctttagctc |
5182782 |
T |
|
| Q |
116 |
gtacaacctttgctacctatacaannnnnnngtcaaggacttcgatatatagcgactcatcaattttgctctgatgtcaagtccatgacgtgataaatca |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5182783 |
gtacaacctttgctacctatacaatttgtttgtcaaggacttcgatatatagcgactcgtcaattttgctctgatgtcaagtccatgacgtgataaatca |
5182882 |
T |
|
| Q |
216 |
cctcgaaggccaagtagagttgtaag |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5182883 |
cctcgaaggccaagtagagttgtaag |
5182908 |
T |
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