View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_4 (Length: 655)
Name: NF19916_low_4
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 10247062 - 10246692
Alignment:
| Q |
16 |
gagactgtgaatcagatgattgacttgagaagcttctaccttcaaacatgtgttcagtactatgttgatgttcaggagcatgatagggaagaccataata |
115 |
Q |
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| T |
10247062 |
gagactgtgaatcagatgattgacttgagaagcttgtaccttcaaacatgtgttcagtactatgttgacgttcaggagcatgatagggaagaccata--- |
10246966 |
T |
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| Q |
116 |
ttgtggcatgttgttccaattagggtttggatgattgaattgataaacattaggatcataaggatatcctatagtataaaatggtccttgaggaatgaaa |
215 |
Q |
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| T |
10246965 |
ttgtggcatgttgttccaattagggtttggatgattgaattgataaacattaggatcataaggatatcctatagtataaaatggtccttgaggaatgaaa |
10246866 |
T |
|
| Q |
216 |
tgatgattgttatatccatttccttgattctcaatatgaaaaacataactactccattcaagtgtaacatgtttttctgccttccttagctttgataaca |
315 |
Q |
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| T |
10246865 |
tgatgattgttatatccatttccttgattctcaatatgaaaaacataactactccattcaagtgtaacatgtttttctgccttccttagcttcgataaca |
10246766 |
T |
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| Q |
316 |
attcttgtggatcagctttacctttcacataagcaaatccagcgggtggatttatattgtaagacaaatctacc |
389 |
Q |
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| T |
10246765 |
atttttgtggatcaactttacctttcaaataagcgaatccagcgggttgatttatattgtaagacaaatctacc |
10246692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 451 - 641
Target Start/End: Complemental strand, 10246630 - 10246441
Alignment:
| Q |
451 |
atgagtacacatacctttaaagcttttcaaaactttagacatggaatttgcccatccatatgaagtttcaattcggagtctgcattccttcaaaaaggga |
550 |
Q |
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| T |
10246630 |
atgagtacacatacctttaaagcttttcaaaactttagacatggaatttgcccatccatatgaagtttcaattcggagtctgcattccttcaaaaaggga |
10246531 |
T |
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| Q |
551 |
taaaacataattcaaattaaactttgcaaattcataaaataagagtgatattttagtttgaaataaataccaagtaaataagtgtagttct |
641 |
Q |
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| T |
10246530 |
taaaacataattcaaattaaactttgcaaattcataaaataagagtgata-tttagattgaaataaataccaagtaaataagtgtagttct |
10246441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 10237499 - 10237542
Alignment:
| Q |
116 |
ttgtggcatgttgttccaattagggtttggatgattgaattgat |
159 |
Q |
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| T |
10237499 |
ttgtggcatgttgtgccaattagggttaggatgattgaattgat |
10237542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 589
Target Start/End: Original strand, 10239616 - 10239652
Alignment:
| Q |
553 |
aaacataattcaaattaaactttgcaaattcataaaa |
589 |
Q |
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| T |
10239616 |
aaacataattcaaattaaagtttgcaaattcttaaaa |
10239652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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