View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_43 (Length: 243)

Name: NF19916_low_43
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_43
NF19916_low_43
[»] chr7 (8 HSPs)
chr7 (14-243)||(22199022-22199250)
chr7 (14-243)||(22238571-22238799)
chr7 (31-140)||(37586410-37586519)
chr7 (57-140)||(2847177-2847260)
chr7 (64-111)||(3746917-3746964)
chr7 (176-243)||(8116882-8116949)
chr7 (30-109)||(11823677-11823756)
chr7 (126-203)||(28139385-28139462)
[»] chr4 (5 HSPs)
chr4 (34-243)||(26184122-26184331)
chr4 (31-143)||(43148645-43148757)
chr4 (28-110)||(39295216-39295297)
chr4 (57-110)||(26253011-26253064)
chr4 (118-174)||(49359745-49359801)
[»] chr8 (8 HSPs)
chr8 (126-230)||(427948-428052)
chr8 (91-230)||(150894-151033)
chr8 (91-189)||(15892101-15892199)
chr8 (93-189)||(26149926-26150022)
chr8 (58-111)||(32158651-32158704)
chr8 (100-144)||(24618212-24618256)
chr8 (207-243)||(26217962-26217998)
chr8 (92-140)||(26218010-26218058)
[»] chr1 (6 HSPs)
chr1 (96-175)||(31421862-31421941)
chr1 (28-112)||(21258253-21258337)
chr1 (176-243)||(38041133-38041200)
chr1 (61-110)||(36577749-36577798)
chr1 (57-109)||(732028-732080)
chr1 (91-187)||(33713699-33713795)
[»] chr3 (3 HSPs)
chr3 (31-107)||(14464065-14464141)
chr3 (174-243)||(15042786-15042855)
chr3 (94-218)||(16252369-16252493)
[»] chr2 (3 HSPs)
chr2 (93-140)||(6282439-6282486)
chr2 (33-110)||(34106394-34106472)
chr2 (125-189)||(41101212-41101276)
[»] chr6 (1 HSPs)
chr6 (128-230)||(3197415-3197517)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 22199022 - 22199250
Alignment:
Q  14 atattacataaaacttagaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  22199022 atatcacataaaacttagaattctgctcttcacgcaactattcttgctcgttctcaactgaatttaccataatgcctctgcgtgagttaactcacgcaga 22199121  T
Q  114 gatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgcagaagcattttaagaagtttg 213  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||| | |||| |||||||| |||||||||||||||||  | ||||| ||| |||||    
T  22199122 gatgaacactaacgtgagttaactcacacagcgtaggataaatcacgcagaatt-acactaacatgaattaactcatgcaggggtattttcagatgtttg 22199220  T
Q  214 gttgggaatgagcaaaatgagttaggagaa 243  Q
    ||||||||||||||||||||||||||||||    
T  22199221 gttgggaatgagcaaaatgagttaggagaa 22199250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 22238799 - 22238571
Alignment:
Q  14 atattacataaaacttagaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  22238799 atatcacataaaacttagaattctgctcttcacgcaactattcttgctcgttctcaactgaatttaccataatgcctctgcgtgagttaactcacgcaga 22238700  T
Q  114 gatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgcagaagcattttaagaagtttg 213  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||| | |||| |||||||| |||||||||||||||||  | ||||| ||| |||||    
T  22238699 gatgaacactaacgtgagttaactcacacagcgtaggataaatcacgcagaatt-acactaacatgaattaactcatgcaggggtattttcagatgtttg 22238601  T
Q  214 gttgggaatgagcaaaatgagttaggagaa 243  Q
    ||||||||||||||||||||||||||||||    
T  22238600 gttgggaatgagcaaaatgagttaggagaa 22238571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 37586410 - 37586519
Alignment:
Q  31 gaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaaagatgaacattaacgtga 130  Q
    |||||||||||||||| ||||| || || |||||||||||||||| || |||||||||| ||||||||| ||||||||||| |||| |||| ||||||||    
T  37586410 gaattctgctcttcacccaactgtttttcctcgttcccaactgaaatttccataatgcccctgcgtgagctaactcacgcagagattaacactaacgtga 37586509  T
Q  131 gttaactcac 140  Q
    | ||||||||    
T  37586510 gctaactcac 37586519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 2847177 - 2847260
Alignment:
Q  57 ttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcac 140  Q
    |||||| |||||||||||| ||   | ||| |||||||||||||||||||||||| | ||  |||||| | |||||||||||||    
T  2847177 ttgctcattcccaactgaaattctaaaaatacctctgcgtgagttaactcacgcagatatttacattagcatgagttaactcac 2847260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 3746964 - 3746917
Alignment:
Q  64 ttcccaactgaatttaccataatgcctctgcgtgagttaactcacgca 111  Q
    |||||||||||| | |||||||||| |||||||||||||| |||||||    
T  3746964 ttcccaactgaaatgaccataatgcttctgcgtgagttaattcacgca 3746917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 8116949 - 8116882
Alignment:
Q  176 cgtgaattaactcatgcagaagcattttaagaagtttggttgggaatgagcaaaatgagttaggagaa 243  Q
    ||||||||||||||  ||| ||||||||  ||| ||||||||||||||||||||| | ||| ||||||    
T  8116949 cgtgaattaactcacacaggagcatttttggaaatttggttgggaatgagcaaaacgtgttgggagaa 8116882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 11823677 - 11823756
Alignment:
Q  30 agaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacg 109  Q
    |||||||||||||| || ||||  || || |||| |||||||||||   |||| |||||| |||||||||||||||||||    
T  11823677 agaattctgctctttacccaacactttttactcgctcccaactgaaaagaccaaaatgcccctgcgtgagttaactcacg 11823756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 28139385 - 28139462
Alignment:
Q  126 cgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgcagaagcatttt 203  Q
    ||||||||||||||| ||||||||  ||| ||| | ||| ||||||||| ||||| |||||||| ||||  |||||||    
T  28139385 cgtgagttaactcacgcagcgtaacttaactcatgcaaatttaacactagcgtgagttaactcacgcaggggcatttt 28139462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 26184122 - 26184331
Alignment:
Q  34 ttctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaaagatgaacattaacgtgagtt 133  Q
    ||||||||||| | |||||  | |||||||||||||| ||||||| ||||||||||  || ||||||||||||| ||| || | |||| || | ||||||    
T  26184122 ttctgctcttcccccaactgattttgctcgttcccaagtgaatttcccataatgcccatgtgtgagttaactcaagcagaggttaacactagcttgagtt 26184221  T
Q  134 aactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgcagaagcattttaagaagtttggttgggaatgagcaaaatga 233  Q
    || |||| |||| | || ||||||||  | ||||||||||||||||| ||||||    || || |||||| |||||||||||| | ||| ||||||||||    
T  26184222 aattcacgcagcttgagttaagtcacacagaattaacactaacgtgagttaactttcacataaacattttcagaagtttggttcgaaattagcaaaatga 26184321  T
Q  234 gttaggagaa 243  Q
    ||| ||||||    
T  26184322 gttgggagaa 26184331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 43148757 - 43148645
Alignment:
Q  31 gaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaaagatgaacattaacgtga 130  Q
    |||||||||||||||| ||||| || |||| |||||||||||||| || || ||||||| |||| |||||||||||||||| |||| |||| || | |||    
T  43148757 gaattctgctcttcacccaactgtttttgcacgttcccaactgaaattcccgtaatgcccctgcatgagttaactcacgcagagattaacactagcatga 43148658  T
Q  131 gttaactcacaca 143  Q
    ||||| |||||||    
T  43148657 gttaagtcacaca 43148645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 39295216 - 39295297
Alignment:
Q  28 ttagaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgc 110  Q
    |||||||||| |||||||| ||||| || || |||||||||||||||| || |||||||||  |||||||| |||||||||||    
T  39295216 ttagaattctactcttcacccaactgttttt-ctcgttcccaactgaaatttccataatgctcctgcgtgaattaactcacgc 39295297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 26253064 - 26253011
Alignment:
Q  57 ttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgc 110  Q
    ||||||| ||||||||||| | || |||||  ||||||||||||||||||||||    
T  26253064 ttgctcgctcccaactgaaatgacaataatatctctgcgtgagttaactcacgc 26253011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 49359801 - 49359745
Alignment:
Q  118 aacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacacta 174  Q
    |||| ||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||    
T  49359801 aacactaaagtgatttaactcacgcagcgtaagttaagtcacgctaaattaacacta 49359745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 428052 - 427948
Alignment:
Q  126 cgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgcagaagcattttaagaagtttggttgggaatgag 225  Q
    ||||||||||||||| | |||| || ||||||||  ||||||||||||||| | | |||||||| ||||  |||||||  ||||||||||||||||||||    
T  428052 cgtgagttaactcactctgcgtgagttaagtcacacaaaattaacactaacataagttaactcacgcaggggcattttcggaagtttggttgggaatgag 427953  T
Q  226 caaaa 230  Q
    |||||    
T  427952 caaaa 427948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 150894 - 151033
Alignment:
Q  91 ctgcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcat 190  Q
    |||| |||||||| ||||||||||||  ||| || ||||||||||||||| || ||| || ||||||||| | |||||| | || ||| | ||||||||     
T  150894 ctgcttgagttaaatcacgcaaagatatacactagcgtgagttaactcacgcaacgtgagttaagtcacgcagaattaatattagcgtaagttaactcac 150993  T
Q  191 gcagaagcattttaagaagtttggttgggaatgagcaaaa 230  Q
    || | ||||||||  |||||||| ||||||||||||||||    
T  150994 gctggagcatttttggaagtttgattgggaatgagcaaaa 151033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 15892199 - 15892101
Alignment:
Q  91 ctgcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactca 189  Q
    |||||| |||||||||||||| |||| |||| ||||||||||||||||||||| |||||| || |||||  |||||||  |||| ||||| ||||||||    
T  15892199 ctgcgttagttaactcacgcagagattaacactaacgtgagttaactcacacaacgtaagttacgtcacacaaaattagtactagcgtgagttaactca 15892101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 26149926 - 26150022
Alignment:
Q  93 gcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactca 189  Q
    ||||||| ||| ||||||| |||| ||||||||||||| ||||||||  ||| ||||| ||| ||||| | |||||||| || | ||| ||||||||    
T  26149926 gcgtgagctaagtcacgcagagattaacattaacgtgacttaactcatgcagtgtaagttaactcacgcagaattaacattagcatgagttaactca 26150022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 32158651 - 32158704
Alignment:
Q  58 tgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgca 111  Q
    ||||| ||||||||| || | || |||||| |||||||||||||||||||||||    
T  32158651 tgctcattcccaactaaaatgactataatgtctctgcgtgagttaactcacgca 32158704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 24618212 - 24618256
Alignment:
Q  100 ttaactcacgcaaagatgaacattaacgtgagttaactcacacag 144  Q
    |||| ||||||| ||||||||| || |||||||||||||||||||    
T  24618212 ttaagtcacgcagagatgaacactagcgtgagttaactcacacag 24618256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 26217998 - 26217962
Alignment:
Q  207 aagtttggttgggaatgagcaaaatgagttaggagaa 243  Q
    |||||||||||||||||||||||| | ||||||||||    
T  26217998 aagtttggttgggaatgagcaaaacgtgttaggagaa 26217962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 26218058 - 26218010
Alignment:
Q  92 tgcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcac 140  Q
    |||||||||||||||||||| |||| |||| || | |||||||||||||    
T  26218058 tgcgtgagttaactcacgcagagattaacactagcatgagttaactcac 26218010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 31421941 - 31421862
Alignment:
Q  96 tgagttaactcacgcaaagatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaa 175  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||| ||| || ||||||||| | | ||||||||||    
T  31421941 tgagttaactcacgcaaagattaacactaacttgagttaactcacacaacgtgagttaagtcacgcatagttaacactaa 31421862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 21258253 - 21258337
Alignment:
Q  28 ttagaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgcaa 112  Q
    |||||| ||||||||| || ||||  || ||||||  ||||||||||| || ||| ||| |||||||||||||||||||||||||    
T  21258253 ttagaactctgctctttacccaacagttattgctctatcccaactgaacttcccaaaatacctctgcgtgagttaactcacgcaa 21258337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 38041200 - 38041133
Alignment:
Q  176 cgtgaattaactcatgcagaagcattttaagaagtttggttgggaatgagcaaaatgagttaggagaa 243  Q
    |||||||||||||| |||  |||||||| | |||||||||||| ||||||||||| | ||| ||||||    
T  38041200 cgtgaattaactcacgcatgagcattttcaaaagtttggttggaaatgagcaaaacgtgttgggagaa 38041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 36577798 - 36577749
Alignment:
Q  61 tcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacgc 110  Q
    |||||||||||||||||| ||||||||||  |  ||||||||||||||||    
T  36577798 tcgttcccaactgaatttcccataatgcccttatgtgagttaactcacgc 36577749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 732080 - 732028
Alignment:
Q  57 ttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactcacg 109  Q
    ||||||||||||||||||| ||  || || | |||||||||||||||||||||    
T  732080 ttgctcgttcccaactgaaattttcaaaacgtctctgcgtgagttaactcacg 732028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 33713699 - 33713795
Alignment:
Q  91 ctgcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaact 187  Q
    |||||||| |||| ||||||| |||| |||| ||  ||||||||| ||||| ||  | |  ||||||||||||| ||||||||||  ||||||||||    
T  33713699 ctgcgtgacttaagtcacgcagagattaacactagtgtgagttaaatcacatagtatgatttaagtcacgtaaatttaacactaatatgaattaact 33713795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 14464065 - 14464141
Alignment:
Q  31 gaattctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgagttaactca 107  Q
    |||| ||||||||| | |||| ||| ||||||| ||||||||||| || | | |||| |||||||||||||||||||    
T  14464065 gaatactgctcttctcccaacaatttttgctcgctcccaactgaactttcgaaaatgtctctgcgtgagttaactca 14464141  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 15042855 - 15042786
Alignment:
Q  174 aacgtgaattaactcatgcagaagcattttaagaagtttggttgggaatgagcaaaatgagttaggagaa 243  Q
    ||||||| |||||||| ||||   |||||| | ||||||||||||||| |||||||| | ||||||||||    
T  15042855 aacgtgagttaactcacgcagggtcattttcaaaagtttggttgggaaggagcaaaacgtgttaggagaa 15042786  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 16252493 - 16252369
Alignment:
Q  94 cgtgagttaactcacgcaaagatgaacattaacgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgca 193  Q
    |||||||||| |||| || || | |||| || ||||||||| ||||||||| ||  | ||||||||| | |||||||||||  |||| |||||||| |||    
T  16252493 cgtgagttaagtcacacagaggttaacactagcgtgagttagctcacacagtgtgtgttaagtcacgcagaattaacactagtgtgagttaactcacgca 16252394  T
Q  194 gaagcattttaagaagtttggttgg 218  Q
       | ||||| |||| |||||||||    
T  16252393 agggtattttgagaaatttggttgg 16252369  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 6282439 - 6282486
Alignment:
Q  93 gcgtgagttaactcacgcaaagatgaacattaacgtgagttaactcac 140  Q
    ||||||||||||||||||| |||| |||| ||||||||||||| ||||    
T  6282439 gcgtgagttaactcacgcagagattaacactaacgtgagttaagtcac 6282486  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 34106394 - 34106472
Alignment:
Q  33 attctgctcttcacgcaactattcttgctcgttcccaactgaatttaccataatgcctctgcgtgag-ttaactcacgc 110  Q
    ||||||||||| || |||| |   ||||||||||| ||||||| || |||||||||| ||||||||| |||||||||||    
T  34106394 attctgctctttacccaaccaaaattgctcgttccaaactgaaattcccataatgcccctgcgtgagtttaactcacgc 34106472  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 41101276 - 41101212
Alignment:
Q  125 acgtgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactca 189  Q
    |||||||||||||||| || ||| || ||||||||| | | ||||||||| ||||| ||||||||    
T  41101276 acgtgagttaactcacgcaacgtgagttaagtcacggagatttaacactagcgtgagttaactca 41101212  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 3197517 - 3197415
Alignment:
Q  128 tgagttaactcacacagcgtaagataagtcacgtaaaattaacactaacgtgaattaactcatgcagaagcattttaagaagtttggttgggaatgagca 227  Q
    ||||||||||||||| |||| || |||||||   | ||||||||||| || || ||||||||  ||   ||||||||| ||||||| ||| |||||||||    
T  3197517 tgagttaactcacactgcgtgagttaagtcaaacataattaacactagcgcgagttaactcacacatgtgcattttaaaaagtttgattgagaatgagca 3197418  T
Q  228 aaa 230  Q
    |||    
T  3197417 aaa 3197415  T

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