View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_45 (Length: 242)
Name: NF19916_low_45
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 46399280 - 46399498
Alignment:
| Q |
1 |
ttttcaaaacaaacaaaactccttttaatcattttcccctcctaacaagagaactaaaagtttggagcaaagttgatagatttcc-gtcaacacaatttc |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46399280 |
ttttcaaaacaaacaaaactccttttaatccttttcccctcctaacaagagaactaaaagtttggagcaaagttgatagatttcccgtcaacacaatttc |
46399379 |
T |
|
| Q |
100 |
acgacaaaccacatcaatacctcataccaaacgcacttagtaaacaaatgctcttccgcctctgaaatatcttcacacctaacacaacatgatgcacaat |
199 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
46399380 |
acgacaaaccacatcaatacctcataccaaacacacttagtaaacaaatgctcttccgcctctgaaatatcttcacaccaaacacaacatgaggcacaat |
46399479 |
T |
|
| Q |
200 |
cccttccaaaatccctaat |
218 |
Q |
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||||||||||| ||||||| |
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| T |
46399480 |
cccttccaaaaaccctaat |
46399498 |
T |
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