View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_48 (Length: 229)
Name: NF19916_low_48
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 44598137 - 44598030
Alignment:
| Q |
11 |
attattctaacttataatacaaaaagagactcgtaaaatttattgggttcattaggacaaagtgtatttgcataaagaaaatggaggtttaggtctgagg |
110 |
Q |
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| T |
44598137 |
attattttaacttataatacaaaaagagactcgtaaaatttattgggttcattaggacaaagtgtgtttgcataaagaaaatggaggtttaggtctgagg |
44598038 |
T |
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| Q |
111 |
aattaaac |
118 |
Q |
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| T |
44598037 |
aattaaac |
44598030 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 44597713 - 44597646
Alignment:
| Q |
144 |
tggtgttgagtgaggttgttggagggggagaagaaatttgtttgtgaggaaggttgagttgacggaag |
211 |
Q |
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| T |
44597713 |
tggtgttgagtgagattgttggagggggagaagaaatttgtttgtgaggaaggttgagttggcggaag |
44597646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 16552839 - 16552759
Alignment:
| Q |
34 |
aagagactcgtaaaatttattgggttcattaggacaaagtgtatttgcataaagaaaatggaggtttaggtctgaggaatt |
114 |
Q |
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| T |
16552839 |
aagaggctcgtaaaattcattgggttcatttgaacaaagtgtctttacataaagagaaaagaggtttacatgtgaggaatt |
16552759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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