View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_49 (Length: 227)
Name: NF19916_low_49
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22199307 - 22199529
Alignment:
| Q |
1 |
caagaacaaaactaatgtccttaagttcatataaaaggcatccaggacaaattagatagcaactataataaactctttaacttctatttgtatcagctag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22199307 |
caagaacaaaactaatgtccttaagttcatataaaaggcatccaggacaaattagatagcaactataataaactctttaacttctatttgtatcagctag |
22199406 |
T |
|
| Q |
101 |
caatcctggatctgcatcctacctgctcttgcaacttatgaaataagtgcttttcaagcttccannnnnnnttagatttcaacatatcttttcaatatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22199407 |
caatcctggatctgcatcctacctgctcttgcaacttatgaaataagtgcttttcaagcttccacccccccttagatttcaacatatcttttcaatatgc |
22199506 |
T |
|
| Q |
201 |
tccttattcttcttcagtttatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
22199507 |
tccttattcttcttcagtttatg |
22199529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22238514 - 22238292
Alignment:
| Q |
1 |
caagaacaaaactaatgtccttaagttcatataaaaggcatccaggacaaattagatagcaactataataaactctttaacttctatttgtatcagctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22238514 |
caagaacaaaactaatgtccttaagttcatataaaaggcatccaggacaaattagatagcaactataataaactctttaacttctatttgtatcagctag |
22238415 |
T |
|
| Q |
101 |
caatcctggatctgcatcctacctgctcttgcaacttatgaaataagtgcttttcaagcttccannnnnnnttagatttcaacatatcttttcaatatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22238414 |
caatcctggatctgcatcctacctgctcttgcaacttatgaaataagtgcttttcaagcttccacccccccttagatttcaacatatcttttcaatatgc |
22238315 |
T |
|
| Q |
201 |
tccttattcttcttcagtttatg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
22238314 |
tccttattcttcttcagtttatg |
22238292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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