View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_5 (Length: 542)
Name: NF19916_low_5
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 524
Target Start/End: Complemental strand, 17401597 - 17401088
Alignment:
| Q |
14 |
caaagggacaacaatagtattattatcggctaatagtacctcaatatttcataagtttcgatatcatcattctcttgccttggtcttttctttttattag |
113 |
Q |
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| T |
17401597 |
caaagggacaacaatagtattattatcagcta-tagtacctcaatatttcataagtttcggtattatcgttctcttgcattggtcttttctttttattag |
17401499 |
T |
|
| Q |
114 |
tcatttcagaagtgttggcatcttcatggttttcacaatccaaactttttgtagaagtacaataatgttgacttt-ctcttaattgagatttcaatttct |
212 |
Q |
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| T |
17401498 |
tcatttcagaagtgttggcatcttcatggttttcacaatccaatctttttgtagaagtgcaataatgttgacttttctcttaattgagatttcaatttct |
17401399 |
T |
|
| Q |
213 |
ctattggcaaatagtcataaagacatttgcaatcatcccaaagttgaagctctttctagtatattttgcgatatttacgatctgatgctccatgattatc |
312 |
Q |
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| T |
17401398 |
ctattggcaaatagtcataaagacatttgcaatcatcccaaagttggagctctttctagtatatttcgcgatatttacgatctgatgctccgtgattatc |
17401299 |
T |
|
| Q |
313 |
ctttgtttttaatgtgtattccatgaagtcaaacacctcaaatttgaaataatcacacacaaattgttttgcaacaagatgtggtttatggtaaatggca |
412 |
Q |
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| T |
17401298 |
ctttgtttttaatgtgtattccatgaagtcaaaaacctcaaatttgaaatcatcacacacaaattgttttgcagcaagatgtggtttatgatgaacgaca |
17401199 |
T |
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| Q |
413 |
tgattgttgcaaaagattggactgacccttctaatgcaatggacgtccaactagagttgaagtagtaattttttattccgcccttcatagggtgaccatg |
512 |
Q |
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| T |
17401198 |
tgattgttgcaaaagattggactgacccttctaatgcaatggacgtccaactagagttgaaatagtaat-ttttattccgcccttcatagggtgaccatg |
17401100 |
T |
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| Q |
513 |
tgatgtcctgtc |
524 |
Q |
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| T |
17401099 |
tgatgtcttgtc |
17401088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 29 - 522
Target Start/End: Original strand, 17401702 - 17402200
Alignment:
| Q |
29 |
agtattattatcggctaatagtacctcaatatttcataagtttcgatatcatcattctcttgccttggtcttttctttttattagtcatttcagaagtgt |
128 |
Q |
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| T |
17401702 |
agtattattatcagttagtagtatctcaatatctcaaaagtaccggtatcatcgttctcttgcctaaatctttcttttttattaatcatttcaaaagtgt |
17401801 |
T |
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| Q |
129 |
tggcatcttcatggttttcacaatccaaactttttgtagaagtacaataatgt--tgactttctcttaattgagatttcaatttctctattggcaaatag |
226 |
Q |
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| T |
17401802 |
cgatatcttcatggttttcagaatccaaactttttatggagttgcagaagtgtgttgacttactcttaattaagatttcaaattctctattgaaaaatag |
17401901 |
T |
|
| Q |
227 |
tcataaagacatttgcaatcatcccaaagttgaagctctttctagtatattttgcgatatttacgatctgatgctccatgattatcctttgtttttaatg |
326 |
Q |
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| T |
17401902 |
tcatcaagacatttgcaatcatcataaagttagagctctttctagtatattttgcgatatctatgatttgatactttgcgattatccttagtttttaatg |
17402001 |
T |
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| Q |
327 |
tgtattccatgaagtcaaacac---ctcaaatttgaaataatcacacacaaattgttttgcaacaagatgtggtttatggtaaatggcatgattgttgca |
423 |
Q |
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| T |
17402002 |
tgtgctccatgaaatcaaacaccttctcatatttgaaatcatcacacccaaattgttttgcaataagatgtagtttatgatgaaacacatgattgttgca |
17402101 |
T |
|
| Q |
424 |
aaagattggactgacccttctaatgcaatggacgtccaactagagttgaagtagtaattttttattccgcccttcatagggtgaccatgtgatgtcctg |
522 |
Q |
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| T |
17402102 |
aaagactagactgaccttgttcatgcattggacatccaaccgaagctgaggtggtagtttccgatttcgccattcatatgttgaccatgtgatgtcctg |
17402200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 521
Target Start/End: Complemental strand, 34013296 - 34013186
Alignment:
| Q |
411 |
catgattgttgcaaaagattggactgacccttctaatgcaatggacgtccaactagagttgaagtagtaattttttattccgcccttcatagggtgacca |
510 |
Q |
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|||||| ||||||||| ||||| |||||||| || ||||||||||| ||| ||| ||| ||| || ||| ||| ||| || |||||||||||||||| |
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| T |
34013296 |
catgatagttgcaaaatattggcctgaccctgctcatgcaatggacatcctactggagctgaggtggtagtttccgattttgcgcttcatagggtgacca |
34013197 |
T |
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| Q |
511 |
tgtgatgtcct |
521 |
Q |
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| T |
34013196 |
tgtgatgtcct |
34013186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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