View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_51 (Length: 225)

Name: NF19916_low_51
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_51
NF19916_low_51
[»] chr8 (2 HSPs)
chr8 (14-225)||(33300121-33300334)
chr8 (60-90)||(28622388-28622418)
[»] chr4 (2 HSPs)
chr4 (52-96)||(12291473-12291517)
chr4 (53-96)||(25065976-25066017)
[»] chr5 (6 HSPs)
chr5 (60-96)||(11487335-11487371)
chr5 (60-96)||(11487635-11487671)
chr5 (63-96)||(1592019-1592052)
chr5 (53-96)||(9050931-9050974)
chr5 (61-101)||(9666082-9666122)
chr5 (60-96)||(17822297-17822333)
[»] chr3 (3 HSPs)
chr3 (57-95)||(19578600-19578638)
chr3 (60-96)||(41529839-41529875)
chr3 (60-96)||(21587084-21587120)
[»] chr1 (1 HSPs)
chr1 (61-96)||(5812197-5812232)
[»] chr7 (3 HSPs)
chr7 (60-93)||(12650778-12650811)
chr7 (60-88)||(35071047-35071075)
chr7 (60-88)||(35097079-35097107)
[»] chr2 (3 HSPs)
chr2 (63-96)||(35226278-35226311)
chr2 (52-96)||(11538292-11538336)
chr2 (71-99)||(24003977-24004005)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 33300121 - 33300334
Alignment:
Q  14 ccaaggatatagttgaaataacnnnnnnnnngtcaacttaaaatctcccaaaatcccctattttctttatatatagtatagatgaatagttgtgaaaatt 113  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33300121 ccaaggatatagttgaaataacaaaaaaaaagtcaacttaaaatctcccaaaatcccctattttctttatatatagtatagatgaatagttgtgaaaatt 33300220  T
Q  114 acacgcttgagcactagttttgtgtataag--atannnnnnnnnnnngtgcaaattagatttactagaagaattattagatactgcgataaataagatca 211  Q
    || |||||||||||||||||||||||||||  |||            |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33300221 acgcgcttgagcactagttttgtgtataagatatatatattttttttgtgcaaattagatttattagaagaattattagatactgcgataaataagatca 33300320  T
Q  212 gtagagaagatgaa 225  Q
     |||||||||||||    
T  33300321 atagagaagatgaa 33300334  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 28622388 - 28622418
Alignment:
Q  60 cccaaaatcccctattttctttatatatagt 90  Q
    |||||||||||||||||||||||||||||||    
T  28622388 cccaaaatcccctattttctttatatatagt 28622418  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12291473 - 12291517
Alignment:
Q  52 taaaatctcccaaaatcccctattttctttatatatagtatagat 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  12291473 taaaatcttccaaaatcccctattttctttatatatagtatagat 12291517  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 25065976 - 25066017
Alignment:
Q  53 aaaatctcccaaaatcccctattttctttatatatagtatagat 96  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  25065976 aaaatctcccaaa--cccctattttctttatatatagtatagat 25066017  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 11487335 - 11487371
Alignment:
Q  60 cccaaaatcccctattttctttatatatagtatagat 96  Q
    |||||||||||||||||||||||||||||||||||||    
T  11487335 cccaaaatcccctattttctttatatatagtatagat 11487371  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 11487635 - 11487671
Alignment:
Q  60 cccaaaatcccctattttctttatatatagtatagat 96  Q
    |||||||||||||||||||||||||||||||||||||    
T  11487635 cccaaaatcccctattttctttatatatagtatagat 11487671  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 1592052 - 1592019
Alignment:
Q  63 aaaatcccctattttctttatatatagtatagat 96  Q
    ||||||||||||||||||||||||||||||||||    
T  1592052 aaaatcccctattttctttatatatagtatagat 1592019  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 9050974 - 9050931
Alignment:
Q  53 aaaatctcccaaaatcccctattttctttatatatagtatagat 96  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  9050974 aaaatctctaaaaaccccctattttctttatatatagtatagat 9050931  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 9666122 - 9666082
Alignment:
Q  61 ccaaaatcccctattttctttatatatagtatagatgaata 101  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  9666122 ccaaaatctcctattttttttatatatagtatagattaata 9666082  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 17822297 - 17822333
Alignment:
Q  60 cccaaaatcccctattttctttatatatagtatagat 96  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  17822297 cccaaaaccccttattttctttatatatagtatagat 17822333  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 19578638 - 19578600
Alignment:
Q  57 tctcccaaaatcccctattttctttatatatagtataga 95  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  19578638 tctcccaaaattccctattttctttatatatagtataga 19578600  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 41529875 - 41529839
Alignment:
Q  60 cccaaaatcccctattttctttatatatagtatagat 96  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41529875 cccaaaaccccctattttctttatatatagtatagat 41529839  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 21587084 - 21587120
Alignment:
Q  60 cccaaaatcccctattttctttatatatagtatagat 96  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  21587084 cccaaaatcccctatttcctttaaatatagtatagat 21587120  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 5812197 - 5812232
Alignment:
Q  61 ccaaaatcccctattttctttatatatagtatagat 96  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5812197 ccaaaataccctattttctttatatatagtatagat 5812232  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 12650778 - 12650811
Alignment:
Q  60 cccaaaatcccctattttctttatatatagtata 93  Q
    ||||| ||||||||||||||||||||||||||||    
T  12650778 cccaatatcccctattttctttatatatagtata 12650811  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 35071047 - 35071075
Alignment:
Q  60 cccaaaatcccctattttctttatatata 88  Q
    |||||||||||||||||||||||||||||    
T  35071047 cccaaaatcccctattttctttatatata 35071075  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 35097079 - 35097107
Alignment:
Q  60 cccaaaatcccctattttctttatatata 88  Q
    |||||||||||||||||||||||||||||    
T  35097079 cccaaaatcccctattttctttatatata 35097107  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 35226278 - 35226311
Alignment:
Q  63 aaaatcccctattttctttatatatagtatagat 96  Q
    ||||||||||||||||||||||||| ||||||||    
T  35226278 aaaatcccctattttctttatatatggtatagat 35226311  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 11538336 - 11538292
Alignment:
Q  52 taaaatctcccaaaatcccctattttctttatatatagtatagat 96  Q
    ||||||||||||||||||| |||||| | || |||||||||||||    
T  11538336 taaaatctcccaaaatcccttattttgtataaatatagtatagat 11538292  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 24004005 - 24003977
Alignment:
Q  71 ctattttctttatatatagtatagatgaa 99  Q
    |||||||||||||||||||||||||||||    
T  24004005 ctattttctttatatatagtatagatgaa 24003977  T

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