View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_55 (Length: 213)

Name: NF19916_low_55
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_55
NF19916_low_55
[»] scaffold0043 (5 HSPs)
scaffold0043 (20-213)||(28993-29186)
scaffold0043 (20-213)||(43851-44044)
scaffold0043 (21-213)||(30822-31019)
scaffold0043 (21-213)||(45680-45877)
scaffold0043 (58-210)||(51044-51201)
[»] scaffold1163 (1 HSPs)
scaffold1163 (21-213)||(705-902)
[»] chr3 (9 HSPs)
chr3 (21-213)||(27388137-27388334)
chr3 (21-213)||(28085391-28085591)
chr3 (61-210)||(27350487-27350641)
chr3 (63-192)||(27380350-27380484)
chr3 (58-213)||(27980763-27980923)
chr3 (21-213)||(28006269-28006466)
chr3 (22-213)||(19482568-19482764)
chr3 (21-156)||(26631142-26631277)
chr3 (21-130)||(26631970-26632079)
[»] chr2 (1 HSPs)
chr2 (21-213)||(22395301-22395498)
[»] chr5 (2 HSPs)
chr5 (80-212)||(6164116-6164253)
chr5 (58-212)||(6164484-6164643)


Alignment Details
Target: scaffold0043 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 29186 - 28993
Alignment:
Q  20 ctactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaa 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29186 ctactctttgcactcaaaagcttcttcaagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcgtgtttgttaa 29087  T
Q  120 tgatgtcattgaagaaggtcttcactttcgcaacaaactccatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29086 tgatgtcattgaagaaggtcttcactttcgcaacaaactccatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 28993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 44044 - 43851
Alignment:
Q  20 ctactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaa 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  44044 ctactctttgcactcaaaagcttcttcaagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcgtgtttgttta 43945  T
Q  120 tgatgtcattgaagaaggtcttcactttcgcaacaaactccatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43944 tgatgtcattgaagaaggtcttcactttcgcaacaaactccatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 43851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 31019 - 30822
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    ||||||||||||||||||| || |||  ||||   | |||| ||| ||||||||| || |||||||| |||| || |||| |  ||||||| ||| | ||    
T  31019 tactctttgcactcaaaagtttgttcatgagatcagttttcgaattaagaagttggttgtgcttcttgagtacttcttgagagatggcatgattgattat 30920  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaactc-----catcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    | |||||||||||||| ||| |||||||  |||| ||||     ||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  30919 gttgtcattgaagaagttctgcactttctgaacatactccttcacatcagaaggtaaaagtccttgatgctgattcaatccatggagaagagaaatca 30822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 45877 - 45680
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    ||||||||||||||||||| || |||  ||||   | |||| ||| ||||||||| || |||||||| |||| || |||| |  ||||||| ||| | ||    
T  45877 tactctttgcactcaaaagtttgttcatgagatcagttttcgaattaagaagttggttgtgcttcttgagtacttcttgagagatggcatgattgattat 45778  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaactc-----catcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    | |||||||||||||| ||| |||||||  |||| ||||     ||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  45777 gttgtcattgaagaagttctgcactttctgaacatactccttcacatcagaaggtaaaagtccttgatgctgattcaatccatggagaagagaaatca 45680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 51044 - 51201
Alignment:
Q  58 tttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaatgatgtcattgaagaaggtcttcactttcgcaacaaac 157  Q
    |||||||||||||||||| || |||||| | |||||||||||| ||||||   || |  ||||| |||||||||||||| ||| ||||||| ||||||||    
T  51044 tttcaaatcaagaagttgattgtgcttcctgagtagttgttgagaagtggtgagtctcataatgttgtcattgaagaagttctgcactttctcaacaaac 51143  T
Q  158 tccatca-----gaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaa 210  Q
    ||| |||     ||||||||||||| ||||||||||||||||| | | ||||||||||    
T  51144 tccttcacattcgaaggtaagagtcgttgatgctgattcaatcaaagaaaaagagaaa 51201  T

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Target: scaffold1163 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 902 - 705
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    ||||||||||| |||||||||| | | | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  902 tactctttgcaatcaaaagcttttccaaaagaccgggtttcaaatcaagaagttgcttatgcttcgtaagtagttgttgataagtggcgtgtttgttaat 803  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaactc-----catcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    ||||| |||||||||||| ||||||||| ||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  802 gatgttattgaagaaggtattcactttctcaacaaactccttcacatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 27388137 - 27388334
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    |||||||||||||||||||||||||  | ||||  ||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||    
T  27388137 tactctttgcactcaaaagcttctttaaaagaccaggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgatggctggcgtgtttgttaat 27388236  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaactc-----catcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    ||||||| |||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27388237 gatgtcaatgaagaaggtcttcactttctcaacaaactccttcacatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 27388334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 28085591 - 28085391
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    |||||||||||||||||||||| |||  |||| ||| |||||||||||||||||| ||  ||||||| |||| ||||||| ||||||  | |||| ||||    
T  28085591 tactctttgcactcaaaagctttttcatgagattggttttcaaatcaagaagttggttgcgcttctttagtacttgttgagaagtggtgtatttgataat 28085492  T
Q  121 gatg---tcattgaagaaggtcttcactttcgcaacaaactccatca-----gaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatc 212  Q
    |  |   |||||||||||| |||  |||||| ||||||||||| |||     |||||||||||||||||||| |||||||||||||| ||||||||||||    
T  28085491 gtagtcatcattgaagaagttctggactttctcaacaaactccttcacattcgaaggtaagagtccttgatgatgattcaatccatgaaaaagagaaatc 28085392  T
Q  213 a 213  Q
    |    
T  28085391 a 28085391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 27350641 - 27350487
Alignment:
Q  61 caaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaatgatgtcattgaagaaggtcttcactttcgcaacaaactcc 160  Q
    ||||||||||||||| || |||||||| |||||||||||| ||||||  ||| |  ||||| |||||||||||||| ||| ||||||| |||||||||||    
T  27350641 caaatcaagaagttgattgtgcttcttgagtagttgttgagaagtggtgtgtctcataatgttgtcattgaagaagttctgcactttctcaacaaactcc 27350542  T
Q  161 atca-----gaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaa 210  Q
     |||     ||||||||||||| ||||||||||||||||| | | ||||||||||    
T  27350541 ttcacattcgaaggtaagagtcgttgatgctgattcaatcaaagaaaaagagaaa 27350487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 27380484 - 27380350
Alignment:
Q  63 aatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaatgatgtcattgaagaaggtcttcactttcgcaacaaactccat 162  Q
    ||||||||||||| || ||||||||||||| ||||||| |||||| || |||| ||||||||||| |||||||||||| ||||||| ||| ||||||| |    
T  27380484 aatcaagaagttggttgtgcttcttaagtacttgttgaaaagtggtatatttgataatgatgtcaatgaagaaggtctgcactttctcaataaactcctt 27380385  T
Q  163 ca-----gaaggtaagagtccttgatgctgattca 192  Q
    ||     ||||||| ||||||||| ||||||||||    
T  27380384 cacatgtgaaggtaggagtccttggtgctgattca 27380350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 213
Target Start/End: Complemental strand, 27980923 - 27980763
Alignment:
Q  58 tttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaatgatgtcattgaagaaggtcttcactttcgcaacaaac 157  Q
    |||| ||||||||||||| || |||||| | | || ||||||| ||||||||||| || ||||| |||||||||||||  ||| ||||||| ||||||||    
T  27980923 tttcgaatcaagaagttggttgtgcttcctgaatacttgttgagaagtggcatgtctgataatgttgtcattgaagaaattctgcactttctcaacaaac 27980824  T
Q  158 tccatca-----gaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    ||| |||     ||||||||||||| |||||||||||||| | |||| |||||| ||||||    
T  27980823 tccttcacattcgaaggtaagagtcgttgatgctgattcagtgcatggaaaagaaaaatca 27980763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 28006466 - 28006269
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    |||||||||||||| ||||||| |||  ||||   | |||  ||||||||||||| || |||||||| ||||   ||||| || |||  |||||| ||||    
T  28006466 tactctttgcactccaaagcttgttcatgagatcagttttagaatcaagaagttggttgtgcttcttgagtacccgttgaaaattggtgtgtttgataat 28006367  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaactc-----catcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    | | ||  |||||||| ||| ||||||| ||||||||||     ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||    
T  28006366 gttatcgatgaagaagttctgcactttctcaacaaactctttcacatcagaagctaagagtccttcatgctgattcaatccatgaaaaagagaaatca 28006269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 19482568 - 19482764
Alignment:
Q  22 actctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaatg 121  Q
    |||||||||||||||||| || |||  ||||   | |||  ||||||||||||| || |||||||  |  | || |||| | |||||||||||| |||||    
T  19482568 actctttgcactcaaaagtttgttcatgagatcagttttagaatcaagaagttggttgtgcttctctatcacttcttgagaggtggcatgtttgataatg 19482667  T
Q  122 atgtcattgaagaaggtcttcactttcgcaacaaactcc-----atcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
     |||| ||||||||| ||| ||||||| ||||  |||||     ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  19482668 ttgtccttgaagaagttctgcactttctcaacgtactccttcacatcagaaggtaagagtccttgatgcagattcaatccatgaaaaagcgaaatca 19482764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 26631277 - 26631142
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    |||||||||||||| ||||||| |||  ||||   | ||||||| |||||||||| || ||||| || | || ||||||| ||||||| |||||| ||||    
T  26631277 tactctttgcactccaaagcttgttcatgagatcagttttcaaagcaagaagttggttgtgcttgttgaatacttgttgagaagtggcgtgtttgataat 26631178  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaa 156  Q
    | | |||||||||||| ||||||||||| |||||||    
T  26631177 gttatcattgaagaagttcttcactttctcaacaaa 26631142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 26632079 - 26631970
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    |||||||||||||| ||||||| |||  |||| ||| |||| |||||| |||||| |  ||||| || | || ||||||| |||| || |||||| ||||    
T  26632079 tactctttgcactccaaagcttgttcatgagattggttttcgaatcaataagttggtcgtgcttgttgaatacttgttgagaagtagcgtgtttgataat 26631980  T
Q  121 gatgtcattg 130  Q
    | ||||||||    
T  26631979 gttgtcattg 26631970  T

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Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 22395498 - 22395301
Alignment:
Q  21 tactctttgcactcaaaagcttcttcgagagactgggtttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaat 120  Q
    ||||||||||| ||||||||||   | | ||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  22395498 tactctttgcaatcaaaagcttaaacaaaagaccaggtttcaaatcaagaagttgcttatgcttcataagtagttgttgataagtggcgtgtttgttaat 22395399  T
Q  121 gatgtcattgaagaaggtcttcactttcgcaacaaactc-----catcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 213  Q
    ||||| |||||||||||| ||||||||| ||| ||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22395398 gatgtaattgaagaaggtattcactttctcaaaaaactccttcacatcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatca 22395301  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 6164253 - 6164116
Alignment:
Q  80 tgcttcttaagtagttgttgataagtggcatgtttgttaatgatgtcattgaagaaggtcttcactttcgcaacaaactcc-----atcagaaggtaaga 174  Q
    |||||| | |||| ||||||| ||||| | |||||| ||||| |||||||||||||| ||| |||| || |||||||||||     ||||||||||| ||    
T  6164253 tgcttccttagtacttgttgagaagtgtcctgtttgataatgttgtcattgaagaagttctgcactatctcaacaaactccttcacatcagaaggtatga 6164154  T
Q  175 gtccttgatgctgattcaatccatgcaaaagagaaatc 212  Q
    ||||| |||||||||||| |||||| ||||||||||||    
T  6164153 gtcctcgatgctgattcagtccatgaaaaagagaaatc 6164116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 6164484 - 6164643
Alignment:
Q  58 tttcaaatcaagaagttgcttatgcttcttaagtagttgttgataagtggcatgtttgttaatgatgtcattgaagaaggtcttcactttcgcaacaaac 157  Q
    |||| ||| ||||||||| || |||||| | |||| |||||||||| || | ||| || ||||| ||| |||||||||  ||| |||| || ||||||||    
T  6164484 tttcgaataaagaagttggttgtgcttccttagtacttgttgataactgtcttgtctgataatgttgttattgaagaaattctgcactatctcaacaaac 6164583  T
Q  158 tcc-----atcagaaggtaagagtccttgatgctgattcaatccatgcaaaagagaaatc 212  Q
    |||     |||||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  6164584 tccttcacatcagaaggtaatagtcctcgatgttgattcaatccatgaaaaagagaaatc 6164643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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