View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_6 (Length: 513)

Name: NF19916_low_6
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_6
NF19916_low_6
[»] chr7 (6 HSPs)
chr7 (4-513)||(38095085-38095594)
chr7 (32-193)||(26788944-26789105)
chr7 (10-98)||(2507407-2507495)
chr7 (285-324)||(26788803-26788842)
chr7 (47-92)||(10350669-10350714)
chr7 (54-98)||(149574-149618)
[»] chr2 (5 HSPs)
chr2 (15-392)||(26179316-26179695)
chr2 (293-496)||(2757878-2758080)
chr2 (10-138)||(2757739-2757867)
chr2 (10-88)||(2758461-2758539)
chr2 (47-113)||(38356880-38356946)
[»] chr3 (6 HSPs)
chr3 (217-497)||(47955558-47955836)
chr3 (4-174)||(47956012-47956182)
chr3 (49-149)||(35898871-35898970)
chr3 (49-149)||(18753730-18753830)
chr3 (4-88)||(47955220-47955304)
chr3 (49-103)||(35899643-35899697)
[»] chr8 (7 HSPs)
chr8 (251-497)||(32019355-32019600)
chr8 (84-155)||(32019827-32019898)
chr8 (10-98)||(25988956-25989044)
chr8 (10-98)||(25989848-25989936)
chr8 (29-89)||(30794-30854)
chr8 (5-89)||(37767502-37767586)
chr8 (10-85)||(32018194-32018269)
[»] chr1 (5 HSPs)
chr1 (10-148)||(38002940-38003078)
chr1 (10-148)||(38003527-38003665)
chr1 (47-90)||(50900555-50900598)
chr1 (47-89)||(19986894-19986936)
chr1 (27-67)||(20291158-20291198)
[»] chr4 (1 HSPs)
chr4 (19-118)||(11960095-11960194)
[»] chr5 (2 HSPs)
chr5 (48-118)||(39985385-39985456)
chr5 (27-95)||(34597638-34597706)
[»] chr6 (1 HSPs)
chr6 (10-90)||(9880574-9880654)


Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 4 - 513
Target Start/End: Complemental strand, 38095594 - 38095085
Alignment:
Q  4 gggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaat 103  Q
    ||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||    
T  38095594 gggtaaattacactcacattccttgaggttttcttaaataatacaaacaccccctctagttttaaactaaacgcaaacctcccttaatttttattcatat 38095495  T
Q  104 ctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatggaaggatcaaaggaaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38095494 ctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatgaaaggatcaaaggaaat 38095395  T
Q  204 nnnnnnnntacgtaaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtga 303  Q
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095394 aaaaaaaatacgtaaaagcaataacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtga 38095295  T
Q  304 agtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095294 agtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcgattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc 38095195  T
Q  404 ttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095194 ttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataatattaaa 38095095  T
Q  504 tgcaggaatc 513  Q
    ||||||||||    
T  38095094 tgcaggaatc 38095085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 26789105 - 26788944
Alignment:
Q  32 ttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacaccacccctatcatgtaaca 131  Q
    ||||||||||||   ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26789105 ttttcttaaatagcacaaacaccccctctagtttttaactaaacacaaacctcccttaatttttattcaaatctacaaacaccacccctatcatgtaaca 26789006  T
Q  132 ccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatggaaggat 193  Q
    | ||||||||| |||||||  |||||| ||||| |||||||| |||||||||||||||||||    
T  26789005 ctgttagttctgtgttaacacagcttcattgtcgaacaaactcaatggattaatggaaggat 26788944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 2507407 - 2507495
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttatt 98  Q
    |||| |||||||| | |||||||||||||||| || || || ||||| |||||||||||||||||||| || ||||||||| |||||||    
T  2507407 attacactcacctcctttgaggttttcttaaaaaacgccaataccccatctaattttaaactaaacactaatctcccttaagttttatt 2507495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 26788842 - 26788803
Alignment:
Q  285 cttagcttttgaggcgtgaagtttgatgcctaaacgtgat 324  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  26788842 cttagcttttgaggcgtgaagtttgatccctaaacgtgat 26788803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 10350669 - 10350714
Alignment:
Q  47 caaacaccccctctaattttaaactaaacacaaacctcccttaatt 92  Q
    ||||||||||||||| ||||||||| |||||  |||||||||||||    
T  10350669 caaacaccccctctagttttaaacttaacacccacctcccttaatt 10350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 149618 - 149574
Alignment:
Q  54 cccctctaattttaaactaaacacaaacctcccttaatttttatt 98  Q
    |||||||| |||| ||||||||||||||||||||| | |||||||    
T  149618 cccctctagttttcaactaaacacaaacctcccttgaattttatt 149574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 26179695 - 26179316
Alignment:
Q  15 actcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacacc 114  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26179695 actcacctcccttgaggttttcttaaataacacaaacaccccctctagttttaaactaaacacaaacctccctttatttttattcaaatctacaaacacc 26179596  T
Q  115 acccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaactaaatggattaatggaaggatcaaaggaaatnnnnnnnn--t 212  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||          |    
T  26179595 acccctatcatgtaacactgttagttctctgttaactaagcttccttgtctaacaagctaaatgtattaatggaaggatcaaatgaaataaaaaaaaaat 26179496  T
Q  213 acgtaaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatg 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26179495 acgtaaaagcaataacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatg 26179396  T
Q  313 cctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattg 392  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26179395 cctaaacgtgatagatattcaattttaggatgaaggaagcgattgtaattcacatcaacataataaagttggatgaattg 26179316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 293 - 496
Target Start/End: Original strand, 2757878 - 2758080
Alignment:
Q  293 ttgaggcgtgaagtttgatgcctaaacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattg 392  Q
    |||| ||||||||||||||| |||||| | ||||||||||||| || |||||||| |||  ||| |||||||||||||||||||||||||||||||||||    
T  2757878 ttgaagcgtgaagtttgatgtctaaacataataaatattcaatatttggatgaagcaagtgattttaattcacatcaacataataaagttggatgaattg 2757977  T
Q  393 cttaatgttgcttttggacaattagagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaaga 492  Q
    |||||||||||||||| | |||| |||||||||||| || ||||||||||| ||||| || ||||||||| | |||||||||||||||||||||||||||    
T  2757978 cttaatgttgcttttgtagaattggagaaggaagtgaattgatagaaactg-aaattctaagttgaaaaactagataaaccaaattcaagaggatgaaga 2758076  T
Q  493 ataa 496  Q
    ||||    
T  2758077 ataa 2758080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 2757739 - 2757867
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaa 109  Q
    |||| |||||||| ||||||||| |||||||||||  | |||| ||||||||||||| || |||||||  || ||| |||||||||||| |||| |||||    
T  2757739 attacactcacctcccttgaggtcttcttaaataacactaacatcccctctaatttttaattaaacacttacatccattaatttttatttaaatttacaa 2757838  T
Q  110 acaccacccctatcatgtaacaccgttag 138  Q
     |||| |||||||||||||||||||||||    
T  2757839 gcacctcccctatcatgtaacaccgttag 2757867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 2758539 - 2758461
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctt 88  Q
    |||| |||||||| |||| |||| |||||||||||  | |||| |||||||||||||||||||||||| ||||||||||    
T  2758539 attacactcacctcccttaaggtcttcttaaataacactaacatcccctctaattttaaactaaacactaacctccctt 2758461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 38356880 - 38356946
Alignment:
Q  47 caaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacac 113  Q
    ||||||||||||||| |||||||  | |||  |||||||||||| ||||| |||||| |||||||||    
T  38356880 caaacaccccctctagttttaaaacatacattaacctcccttaagttttaatcaaatatacaaacac 38356946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 217 - 497
Target Start/End: Complemental strand, 47955836 - 47955558
Alignment:
Q  217 aaaagcaaaaacaatgaacatattctatctggtgaaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatgccta 316  Q
    ||||| || ||||||||  || ||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |     
T  47955836 aaaaggaataacaatgattatcttctacctagtgaaaaatggattaatggaaagaactgaaataaaacctcagcttttgaggcgtgaagtttgatgc-tc 47955738  T
Q  317 aacgtgataaatattcaattttaggatgaaggaagcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgcttttggacaatta 416  Q
    ||| | | |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| || ||||||| | ||||     
T  47955737 aacataaaaaatattcaattttaggatgaaggaagtgattgtaattcacatcaacataataaaattggatgaattgcttaacgtggcttttgcagaattg 47955638  T
Q  417 gagaaggaagtggatggatagaaactgaaaattttaggttgaaaaattggataaaccaaattcaagaggatgaagaataat 497  Q
    ||||||||| | ||| ||| ||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||    
T  47955637 gagaaggaattagatagattgaaactg-aaattctaggttgaaaaaatagataaaccaaattcaagaggatgaagaataat 47955558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 47956182 - 47956012
Alignment:
Q  4 gggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaat 103  Q
    ||||| |||| ||||||||  |||||||| ||||||||||   | ||||||||||||| ||| ||||||||||| || ||||||||||||||| ||||||    
T  47956182 gggtaaattacactcacctctcttgaggtcttcttaaatagcactaacaccccctctagtttaaaactaaacactaatctcccttaatttttaatcaaat 47956083  T
Q  104 ctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttccttgtctaacaaacta 174  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| || ||||||    
T  47956082 ctacaaacaccacccctgtcatgtaacaccgttggttctctgttaacttagcttccttgtcgaaaaaacta 47956012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 35898871 - 35898970
Alignment:
Q  49 aacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacaccacccctatcatgtaacaccgttagttctctgtta 148  Q
    ||||||||||||| |||| |||| ||||| ||||||||||| |||||||||||||  |||| |||| ||| | |||  || ||||||||| |||||||||    
T  35898871 aacaccccctctattttttaactcaacactaacctcccttattttttattcaaatagacaaccacctcccttttcacttagcaccgttag-tctctgtta 35898969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 18753830 - 18753730
Alignment:
Q  49 aacaccccctctaattttaaactaaacacaaacctccctta-atttttattcaaatctacaaacaccacccctatcatgtaacaccgttagttctctgtt 147  Q
    ||||||||||||| |||| |||| ||||| |||||||||||  |||||||||||||  |||| |||| ||| | |||  |||||||||||| ||||||||    
T  18753830 aacaccccctctattttttaactcaacactaacctcccttatttttttattcaaatagacaaccacctcccttttcacttaacaccgttag-tctctgtt 18753732  T
Q  148 aa 149  Q
    ||    
T  18753731 aa 18753730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 47955220 - 47955304
Alignment:
Q  4 gggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctt 88  Q
    ||||| |||| |||||||| |||||| |||||||||||||   | ||||||||||||| |||| || ||||||  ||||||||||    
T  47955220 gggtaaattacactcacctcccttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctccctt 47955304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 35899697 - 35899643
Alignment:
Q  49 aacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaat 103  Q
    ||||||||||||| |||| |||| ||||| |||||||||||||| |||| |||||    
T  35899697 aacaccccctctagtttttaactcaacactaacctcccttaattgttatacaaat 35899643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 251 - 497
Target Start/End: Complemental strand, 32019600 - 32019355
Alignment:
Q  251 aaaaatggattaatggaaagacctgaaataaaaccttagcttttgaggcgtgaagtttgatgcctaaacgtgataaatattcaattttaggatgaaggaa 350  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||||| |||||||||||    
T  32019600 aaaaaaggcttaatggaaagacctgagataaaaccttagcttttgaggcgagaagtttgatgtctatacgtaataaatat-caatttttggatgaaggaa 32019502  T
Q  351 gcaattgtaattcacatcaacataataaagttggatgaattgcttaatgttgc-ttttggacaattagagaaggaagtggatggatagaaactgaaaatt 449  Q
    |  ||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||   |||| |||||||||||| || ||||||||||| |||||    
T  32019501 gtgattttaattcacatcgacataataaagttggatgaattgcttaatgttgctttttgcggaattggagaaggaagtgaattgatagaaactg-aaatt 32019403  T
Q  450 ttaggttgaaaaattggataaaccaaattcaagaggatgaagaataat 497  Q
     |  ||||||||| | ||||||||||||| ||||||||||||||||||    
T  32019402 ctttgttgaaaaactagataaaccaaattgaagaggatgaagaataat 32019355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 32019898 - 32019827
Alignment:
Q  84 cccttaatttttattcaaatctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagc 155  Q
    |||||||| ||||||||||||||||||| || ||||||| || |||||||||||||||||||||||||||||    
T  32019898 cccttaatgtttattcaaatctacaaacgcctcccctattatataacaccgttagttctctgttaactaagc 32019827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 25988956 - 25989044
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttatt 98  Q
    |||| ||| |||| || ||||||||||||||| ||  | ||||||||||||| ||||  |||||||||||||||||||||| |||||||    
T  25988956 attacacttacctaccatgaggttttcttaaacaaccctaacaccccctctagttttctactaaacacaaacctcccttaaattttatt 25989044  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 25989936 - 25989848
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttatt 98  Q
    |||| |||||||| ||||  | |||||||||| ||  | |||||||||| || |||| ||||||||||||||||||||||| |||||||    
T  25989936 attacactcacctcccttatgattttcttaaaaaacactaacaccccctttagttttcaactaaacacaaacctcccttaaattttatt 25989848  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 30854 - 30794
Alignment:
Q  29 aggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctta 89  Q
    ||||||||||||||||   ||| ||||||| || ||||||||||||||| |||||||||||    
T  30854 aggttttcttaaataacaaaaagaccccctttagttttaaactaaacactaacctccctta 30794  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 37767586 - 37767502
Alignment:
Q  5 ggtagattatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctccctta 89  Q
    |||| |||| ||| |||| || |||||| || ||||||||  |||||| |||||||| |||| ||||||||| ||||||||||||    
T  37767586 ggtaaattacactaacctcccctgaggtattgttaaataacacaaacatcccctctagtttttaactaaacataaacctccctta 37767502  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 32018194 - 32018269
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcc 85  Q
    |||| |||||| ||| ||||||| |||||||||||  | ||||  |||||||||||| |||||||||| |||||||    
T  32018194 attacactcactttctttgaggtcttcttaaataacactaacattccctctaatttttaactaaacactaacctcc 32018269  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 38002940 - 38003078
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaa 109  Q
    |||| |||||||| |||| |||||||||||||||   | |||| |||||||| |||| || |||||||  ||||||||||||||||||||||| | ||||    
T  38002940 attacactcacctccctttaggttttcttaaatagcactaacatcccctctagtttttaattaaacacttacctcccttaatttttattcaaagcgacaa 38003039  T
Q  110 acaccacccctatcatgtaacaccgttagttctctgtta 148  Q
    ||||| ||  | | ||||||||  |||||| ||||||||    
T  38003040 acacctccattgttatgtaacattgttagtgctctgtta 38003078  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 38003665 - 38003527
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaa 109  Q
    |||| |||||||| |||| |||| ||||||||||   | |||| |||||||| |||| |||||||||| ||| |||  ||| |||||||||||   ||||    
T  38003665 attacactcacctcccttaaggtcttcttaaatagcactaacaacccctctactttttaactaaacactaacttcctataacttttattcaaagtgacaa 38003566  T
Q  110 acaccacccctatcatgtaacaccgttagttctctgtta 148  Q
     |||| |||||||||||||||| ||| ||| ||||||||    
T  38003565 tcacctcccctatcatgtaacagcgtgagtgctctgtta 38003527  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 50900598 - 50900555
Alignment:
Q  47 caaacaccccctctaattttaaactaaacacaaacctcccttaa 90  Q
    ||||||||||||||||||||||| |||| || ||||||||||||    
T  50900598 caaacaccccctctaattttaaaataaatactaacctcccttaa 50900555  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 19986936 - 19986894
Alignment:
Q  47 caaacaccccctctaattttaaactaaacacaaacctccctta 89  Q
    |||||||| |||||| |||||||||||| ||||||||||||||    
T  19986936 caaacacctcctctagttttaaactaaatacaaacctccctta 19986894  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 20291158 - 20291198
Alignment:
Q  27 tgaggttttcttaaataatgcaaacaccccctctaatttta 67  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  20291158 tgaggttttcttaaataacacaaacaccccctctagtttta 20291198  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11960095 - 11960194
Alignment:
Q  19 accttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaatttttattcaaatctacaaacaccaccc 118  Q
    |||| |||||||||||  |||||||   ||||||||||||||| ||||||||||||||||||||||||||| ||| |  ||||||  | |||||||||||    
T  11960095 acctcccttgaggtttagttaaatagcacaaacaccccctctagttttaaactaaacacaaacctcccttattttgttatcaaattgaaaaacaccaccc 11960194  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 39985456 - 39985385
Alignment:
Q  48 aaacaccccctctaattttaaactaaacacaaacctcccttaatttttat-tcaaatctacaaacaccaccc 118  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||||| | ||||||  |||||||||||||    
T  39985456 aaacaccccctttagttttaaactaaacacaaacctcccttattttttttatcaaattgacaaacaccaccc 39985385  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 34597706 - 34597638
Alignment:
Q  27 tgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaattttt 95  Q
    |||||| | |||||||||  |||||| |||||||||||||||| ||||||| | |||||| ||| ||||    
T  34597706 tgaggtctccttaaataacacaaacatcccctctaattttaaaataaacactagcctcccctaagtttt 34597638  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 9880574 - 9880654
Alignment:
Q  10 attatactcaccttccttgaggttttcttaaataatgcaaacaccccctctaattttaaactaaacacaaacctcccttaa 90  Q
    |||| |||||||| ||||||| |||  ||||||||   | |||||||||||| ||||||| || |||| ||||||||||||    
T  9880574 attacactcacctcccttgagttttctttaaataacaaagacaccccctctagttttaaaatagacaccaacctcccttaa 9880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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