View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19916_low_7 (Length: 468)
Name: NF19916_low_7
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19916_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 1516014 - 1516456
Alignment:
| Q |
16 |
ataagcagctggaacatgatgcaaaggttaaaactctttctagttgaagatataatttttacttctttcctattttcttatatctccaattctnnnnnnn |
115 |
Q |
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| T |
1516014 |
ataagcagctggaacatgatgcaaaggtttaaactctttctagttgaagatataatttttacttctttcctattttcttatatctccaattctaaaaaaa |
1516113 |
T |
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| Q |
116 |
tgtaggaacatccagagaaatatgatattgaagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatctttctttgcatatc |
215 |
Q |
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| T |
1516114 |
tgtaggaacatccagagaaatatgatattgaagggctaactggaaatgaatctgaagttattgaaatggtcagtcaacgttttatctttctttgcatatc |
1516213 |
T |
|
| Q |
216 |
aataatccttctacttgtgtgtttatgtcatattacttgcttgcaaatagtggaatattaaattatattttttcgattacgtttcctggcaggatttgat |
315 |
Q |
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| T |
1516214 |
aataatccttctacttgtgtgtttatgtcatattacttgcttgcaaatagtggaatattaaattatattttttcgattacgtttcctggcaggatttgat |
1516313 |
T |
|
| Q |
316 |
gcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattggctgctgacgatgat |
415 |
Q |
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| T |
1516314 |
gcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattggctgctgacgatgat |
1516413 |
T |
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| Q |
416 |
agtgaaacagattcagaagaagaaagtagcactgatgatgatg |
458 |
Q |
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| T |
1516414 |
agtgaaacagattcagaagaagaaagtagcactgatgatgatg |
1516456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 301 - 455
Target Start/End: Complemental strand, 36613686 - 36613535
Alignment:
| Q |
301 |
ctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattg |
400 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||| |||||||| || ||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
36613686 |
ctggcaggatttgatgcttggtgttgctgatcttcatacaccagaggctgtggcagctgcagagtcagctgtttccagttgtcagcctgtgatttcattg |
36613587 |
T |
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| Q |
401 |
gctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatgatg |
455 |
Q |
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| T |
36613586 |
gctgct---gatgatagtgaaatagattcagaagaagaaagtggcgccgatgatg |
36613535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 36613853 - 36613768
Alignment:
| Q |
116 |
tgtaggaacatccagagaaatatgatattgaagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatc |
201 |
Q |
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||||||| |||||||||||||||||| |||||| ||| || ||||||||||| ||||||||||||||||| |||||||||| |||| |
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| T |
36613853 |
tgtaggaccatccagagaaatatgattttgaagagctaacgggaaatgaatccgaagttattgaaatggttagtcaatgttctatc |
36613768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 36613972 - 36613909
Alignment:
| Q |
16 |
ataagcagctggaacatgatgcaaaggttaaaactc--tttctagttgaagatataatttttac |
77 |
Q |
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|||||| | |||| |||||||||||||||||| || |||||| ||||||||||||||||||| |
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| T |
36613972 |
ataagcggttggagcatgatgcaaaggttaaagcttgatttctaattgaagatataatttttac |
36613909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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