View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19916_low_9 (Length: 459)

Name: NF19916_low_9
Description: NF19916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19916_low_9
NF19916_low_9
[»] chr6 (3 HSPs)
chr6 (133-326)||(300964-301166)
chr6 (371-454)||(301231-301314)
chr6 (104-135)||(300919-300950)
[»] chr2 (16 HSPs)
chr2 (371-455)||(32799905-32799989)
chr2 (371-455)||(32309077-32309161)
chr2 (371-455)||(32565674-32565758)
chr2 (371-455)||(32806859-32806943)
chr2 (371-455)||(32815296-32815380)
chr2 (371-455)||(28215858-28215942)
chr2 (155-271)||(32815548-32815665)
chr2 (70-135)||(32807597-32807662)
chr2 (141-239)||(32800177-32800280)
chr2 (272-314)||(32305242-32305284)
chr2 (133-211)||(32308788-32308866)
chr2 (146-227)||(32807264-32807345)
chr2 (53-114)||(32815670-32815731)
chr2 (377-409)||(28216008-28216040)
chr2 (371-404)||(28220194-28220227)
chr2 (140-192)||(32807520-32807573)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 133 - 326
Target Start/End: Original strand, 300964 - 301166
Alignment:
Q  133 taattccataactcatcaatccattattttgattgattgagtccataagtgaagaattgcatttttgaattttaataatgaaaacaaaggtgctagaaga 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  300964 taattccataactcatcaatccattattttgattgattgagtccataagtgaagaattgcatttttgaattttaataatgaaaacaaaggtgctagaaga 301063  T
Q  233 agaattagttacccttaagaagatta-----atctcatggttacccctagtgagtccattcc----tatataaaaagagtatgaatatgctgctaactaa 323  Q
    ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||||    
T  301064 agaattagttacccttaagaagattaatctcatctcatggttacccctagtgagtccattcctatatatataaaaagagtatgaatatgatgctaactaa 301163  T
Q  324 cca 326  Q
    |||    
T  301164 cca 301166  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 301231 - 301314
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctct 454  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  301231 atcatcaagaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctct 301314  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 135
Target Start/End: Original strand, 300919 - 300950
Alignment:
Q  104 aaacttgtatactatcgacgaaacagatttaa 135  Q
    ||||||||||||||||||||||||||||||||    
T  300919 aaacttgtatactatcgacgaaacagatttaa 300950  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 32799989 - 32799905
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  32799989 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctc 32799905  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 32309077 - 32309161
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctc 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  32309077 atcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctc 32309161  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 32565758 - 32565674
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctc 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  32565758 atcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctc 32565674  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 32806943 - 32806859
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctc 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||    
T  32806943 atcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttccctctc 32806859  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 32815380 - 32815296
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctc 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  32815380 atcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctc 32815296  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 28215942 - 28215858
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctc 455  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||||    
T  28215942 atcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctc 28215858  T

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Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 32815665 - 32815548
Alignment:
Q  155 attattttgattgattgagtccataagtgaagaattgcatttttgaattttaataatgaaaacaaaggtgctagaagaagaattagtta-cccttaagaa 253  Q
    |||||||||||||||||||||||||| ||||||||||    ||||||||||||| || | |||||||||  |||||||||||||| ||| ||||||||||    
T  32815665 attattttgattgattgagtccataaatgaagaattgagggtttgaattttaatcatcagaacaaaggtagtagaagaagaattacttaccccttaagaa 32815566  T
Q  254 gattaatctcatggttac 271  Q
    ||||||||||||| ||||    
T  32815565 gattaatctcatgattac 32815548  T

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Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 32807662 - 32807597
Alignment:
Q  70 taaacaaacaagtgctttaaaaacattgtttaagaaacttgtatactatcgacgaaacagatttaa 135  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32807662 taaaaaaataagtgctttaaaaacattgtttaagaaacttgtatactatcgacgaaatagatttaa 32807597  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 32800280 - 32800177
Alignment:
Q  141 taactcatcaatccattattttgattgattgagtccataagtgaagaattgcatttttgaattttaataatgaaaac-----aaaggtgctagaagaaga 235  Q
    |||| |||||||||||||||||||||||  |||||||||||||||| |||||    || ||||||| |||||| |||     ||||||||||||||||||    
T  32800280 taacccatcaatccattattttgattgaccgagtccataagtgaaggattgcgcgattaaattttagtaatgagaacaaattaaaggtgctagaagaaga 32800181  T
Q  236 atta 239  Q
    ||||    
T  32800180 atta 32800177  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 32305242 - 32305284
Alignment:
Q  272 ccctagtgagtccattcctatataaaaagagtatgaatatgct 314  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  32305242 ccctagtgagtccattcctatataaaaagagtagcaatatgct 32305284  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 32308788 - 32308866
Alignment:
Q  133 taattccataactcatcaatccattattttgattgattgagtccataagtgaagaattgcatttttgaattttaataat 211  Q
    |||||||||||| |||||||  ||||||||||| ||| |||| ||||| |||| ||||||   ||||||||||||||||    
T  32308788 taattccataacccatcaatttattattttgatagatcgagttcataaatgaaaaattgcgggtttgaattttaataat 32308866  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 32807345 - 32807264
Alignment:
Q  146 catcaatccattattttgattgattgagtccataagtgaagaattgcatttttgaattttaataatgaaaacaaaggtgcta 227  Q
    |||| ||||||||||| ||||||  |||||||||||||||||| |||   ||| ||||||||||| || || ||||||||||    
T  32807345 catcgatccattatttagattgaccgagtccataagtgaagaaatgcgagtttaaattttaataacgagaagaaaggtgcta 32807264  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 32815731 - 32815670
Alignment:
Q  53 ataaatatagttaatgttaaacaaacaagtgctttaaaaacattgtttaagaaacttgtata 114  Q
    ||||||||||||| ||||| || |||||||| |||||  | |||||||||||||||||||||    
T  32815731 ataaatatagttagtgttatactaacaagtgttttaaggatattgtttaagaaacttgtata 32815670  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 28216040 - 28216008
Alignment:
Q  377 aagaaaatgaggagattcttcatcttcaaccca 409  Q
    |||||||||||||||||||||||||||||||||    
T  28216040 aagaaaatgaggagattcttcatcttcaaccca 28216008  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 28220194 - 28220227
Alignment:
Q  371 atcatcaagaaaatgaggagattcttcatcttca 404  Q
    ||||||||||||||||||||| ||||||||||||    
T  28220194 atcatcaagaaaatgaggagaatcttcatcttca 28220227  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 32807573 - 32807520
Alignment:
Q  140 ataactcatcaatc-cattattttgattgattgagtccataagtgaagaattgc 192  Q
    ||||| |||||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  32807573 ataacccatcaatctcataattttgattgattaagtccatatgtgaagaattgc 32807520  T

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